Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20117
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49742| Best HMM Match : Dam (HMM E-Value=5.8) 33 0.33
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35) 33 0.33
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 30 1.7
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036) 30 2.3
SB_45378| Best HMM Match : DUF843 (HMM E-Value=4.7) 29 4.0
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 29 4.0
SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 7.0
>SB_49742| Best HMM Match : Dam (HMM E-Value=5.8)
Length = 219
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 91 QHTRAYFLESVNDFFQRTSFPNGLNCIPR 5
+H + + N FQ TSFPNGL C PR
Sbjct: 11 EHRKYLRFKWKNTLFQYTSFPNGLACCPR 39
>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
Length = 1686
Score = 32.7 bits (71), Expect = 0.33
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +3
Query: 477 INIIISHPHKDLIINAPATGVGSPTLI*ILAYPLSTCIFYMDTKFQVNRMHGSVIINGTS 656
+N ++ P D++ A+ + S T ++ TCI + +KF V H SVI+ G+S
Sbjct: 523 MNRVVHFPQVDIVFVLSASSMKSSTTFSLM----QTCILKIGSKFGVYTFHYSVILYGSS 578
Query: 657 VKTTVDLYISIDY 695
D + Y
Sbjct: 579 SVKKFDFNTAFPY 591
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +3
Query: 477 INIIISHPHKDLIINAPATGVGSPTLI*ILAYPLSTCIFYMDTKFQVNRMHGSVIINGTS 656
+N ++ P D++ A+ + S T ++ CI + +KF V H SVI+ G+S
Sbjct: 781 MNRVVHFPQIDIVFVLSASSMKSSTTFSLM----QNCILKIGSKFGVYTFHYSVILYGSS 836
Query: 657 VKTTVDLYISIDY 695
D + Y
Sbjct: 837 SVKKFDFNTAFPY 849
>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
Length = 1336
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -1
Query: 323 PSAVPKLSR-GFFLTFSSISKHISLNNHLNQVRFHSNLDSIDRAIRLYLLRKH 168
P VP+ R L S I +I H N V F +L D + LYL R H
Sbjct: 377 PCGVPEAKRFQDHLATSKIELNIVSREHANTVIFSGDLPDPDHRVYLYLARGH 429
>SB_45378| Best HMM Match : DUF843 (HMM E-Value=4.7)
Length = 228
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 91 QHTRAYFLESVNDFFQRTSFPNGLNCIPR 5
+H + + N FQ T PNGL C PR
Sbjct: 34 EHRKYLRFKWKNTLFQYTCLPNGLKCCPR 62
>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 953
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -2
Query: 427 SGFT*YELHKKTF-SCNNCTIISLPTQIDLETCGRRPAPCPSSRAVSSSLSHPFRS 263
SG E K+ F SCN SL ++ D C R P P R + L H +S
Sbjct: 650 SGIELTERRKRHFVSCNTLGRRSLASRRDSRACARAPKMPPPERQALARLRHTHQS 705
>SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 800
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
++HL+ VR H +LD + L L+R H HL
Sbjct: 605 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 635
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
++HL+ VR H +LD + L L+R H HL
Sbjct: 614 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 644
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
++HL+ VR H +LD + L L+R H HL
Sbjct: 623 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 653
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
++HL+ VR H +LD + L L+R H HL
Sbjct: 632 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 662
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
++HL+ VR H +LD + L L+R H HL
Sbjct: 641 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 671
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
++HL+ VR H +LD + L L+R H HL
Sbjct: 650 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 680
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
++HL+ VR H +LD + L L+R H HL
Sbjct: 659 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 689
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
++HL+ VR H +LD + L L+R H HL
Sbjct: 668 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 698
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
++HL+ VR H +LD + L L+R H HL
Sbjct: 677 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 707
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
++HL+ VR H +LD + L L+R H HL
Sbjct: 713 HDHLDLVRDHGHLDLVRDHDHLDLVRDHDHL 743
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
++HL+ VR H +LD + L L+R H HL
Sbjct: 731 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 761
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
++HL+ VR H +LD + L L+R H HL
Sbjct: 740 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 770
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
++HL+ VR H +LD + L L+R H HL
Sbjct: 749 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 779
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
++HL+ VR H +LD + L L R H HL
Sbjct: 686 HDHLDLVRDHDHLDLVRDHDHLDLFRDHDHL 716
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
+ HL+ VR H +LD + L L+R H HL
Sbjct: 722 HGHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 752
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,667,681
Number of Sequences: 59808
Number of extensions: 403302
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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