Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20117
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 450 IPPLRWAFKINIIISHPHKDLIINAPATGVGSPTLI 557
           +PP RW  +   +    +K + ++  A GV +PT++
Sbjct: 708 VPP-RWIVEPTDVSVERNKHVALHCQAQGVPTPTIV 742


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 450 IPPLRWAFKINIIISHPHKDLIINAPATGVGSPTLI 557
           +PP RW  +   +    +K + ++  A GV +PT++
Sbjct: 704 VPP-RWIVEPTDVSVERNKHVALHCQAQGVPTPTIV 738


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 489 ISHPHKDLIINAPATGVGSPTLI*ILAYPLSTCIFYMDTK-FQVNRMHGSVIINGTSVKT 665
           I H  K  I+      V  P    +  YP+ + ++  DT+   +NR    V  NGT +  
Sbjct: 494 IRHMDKKAIVAGETLRVTCP----VAGYPIESIVWERDTRVLPINRKQ-KVFPNGTLIIE 548

Query: 666 TVD 674
            V+
Sbjct: 549 NVE 551


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 570 YPLSTCIFYMDT 605
           YPL+ C++Y  T
Sbjct: 298 YPLTGCLYYFST 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,131
Number of Sequences: 438
Number of extensions: 3863
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)