Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20116
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    34   0.022
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    27   2.6  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    27   2.6  
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    25   7.9  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    25   7.9  

>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
 Frame = -3

Query: 646 FRVLLLRIGRGSLEVRQFCSSPRCSVLAKYTVSRNSWSSEPRVTSII---VRNVVISLGF 476
           F+     +   S+E+R   ++  CSV+     + NS++    + S I   +R++   L +
Sbjct: 324 FKAFFTLLESESMEIRLQTATTICSVIGCLDTTPNSFAVVEEICSFICDALRDIRFRLAY 383

Query: 475 PQRHERGQSLRDFL----DPSRLKALEAVDQLQHHE 380
           P+  +   SL D L    DP  + ALE +D L+  E
Sbjct: 384 PECFQIISSLCDKLGPHSDPYLIPALEVIDYLRGSE 419


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 341 SWSKELRRSEDFGHSFVRCPP 279
           SW+++LRRSE  G +   CPP
Sbjct: 111 SWARKLRRSEINGSAEGYCPP 131


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 532 SEPRVTSIIVRNVVISLGFPQRHERGQSLRDFLDPSRLKALEAVDQLQHHE 380
           S P V + ++      LGFP++ E   ++  ++  + L AL     L  HE
Sbjct: 675 SVPEVRASVLTAFTTFLGFPEKTEEVVAVETYIAIAALAALSDASPLVRHE 725


>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 42  KAGRRIFCPAVWNSNSPVNVTLMLY 116
           KA RR+   A+W    PV++  +L+
Sbjct: 175 KAARRVNLEALWRQYGPVSIIALLF 199


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 475 PQRHERGQSLRDFLDPSRLKALEAVDQLQH 386
           P   E  Q +RD L PSRL  L  + ++QH
Sbjct: 214 PSIMESRQWIRDLLLPSRLGLLLDIGRIQH 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,366
Number of Sequences: 5004
Number of extensions: 58994
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)