Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20116
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1118 + 27756288-27756337,27756505-27756619,27756883-277570...    29   4.7  
02_05_0436 - 28971733-28972020,28972178-28972525,28972738-289729...    29   4.7  
08_02_1182 + 24992256-24992708,24992942-24993238                       28   8.2  

>06_03_1118 +
           27756288-27756337,27756505-27756619,27756883-27757033,
           27757219-27757301,27757424-27757519,27757615-27757757,
           27757858-27757942,27758158-27758237,27758335-27758422
          Length = 296

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 127 ICSLYSMRVTLTGLLEFHTAGQNILLPA--LTDDFGCT 20
           IC+  +M +++ G+ E    GQN+ + A  LTD F C+
Sbjct: 169 ICNNMAMAISMLGVSEAFALGQNLGIKASVLTDIFNCS 206


>02_05_0436 -
           28971733-28972020,28972178-28972525,28972738-28972920,
           28973096-28973170,28973238-28973392,28973540-28974043,
           28975889-28975964
          Length = 542

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 48  GRRIFCPAVWNSNSPVNVTLMLYKEQMASQIVCQQSV----QPQTLSLNAITEFCDLVPR 215
           G R  C A+  SN+ +N++  ++ E    + +C++      +     L+  T   +LVP 
Sbjct: 175 GARGVCAALALSNAIINLSATIFGELWKLEPLCEEKKVRWRKEMDWLLSPTTYMVELVPT 234

Query: 216 QQFGEDG 236
           +Q G DG
Sbjct: 235 KQNGADG 241


>08_02_1182 + 24992256-24992708,24992942-24993238
          Length = 249

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
 Frame = -2

Query: 593 LQFASLLSPCKIHSLP*QLVFGAESDVNHRPERCY*PG----LPSAPRTRTKSPR 441
           LQ A++   C   +LP  L         HRP+ C  P     LP A   R   PR
Sbjct: 3   LQAAAVAFSCATVALPRALALLLAPPARHRPQHCRCPAHRLLLPQAAAARAARPR 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,675,062
Number of Sequences: 37544
Number of extensions: 464904
Number of successful extensions: 1573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)