Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20116
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF045646-4|AAK29837.2|  295|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    29   4.2  
V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein ( Caeno...    29   4.2  
J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein ( C.ele...    29   4.2  
Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>Z73899-8|CAA98079.2|  669|Caenorhabditis elegans Hypothetical
           protein ZK829.10 protein.
          Length = 669

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 258 SWFWP--KHRWTPYKAMAKVFAPSKLFRPTPN 347
           ++ WP  K RWT   A + +FA S  FRP P+
Sbjct: 483 AYTWPIWKWRWTTAPAFSIIFAVSAFFRPFPS 514


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
            F45E4.4 protein.
          Length = 2361

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 104  GHVDRTIGVPHGRTEYSPAGL 42
            GH+D+ I +P G T + PAG+
Sbjct: 1638 GHIDQPISLPRGHTGFKPAGI 1658


>AF045646-4|AAK29837.2|  295|Caenorhabditis elegans Hypothetical
           protein F56B3.2b protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 520 LSAPKTNCYGRLCILQGLSNEANCKTDEPLNSLC 621
           L  P  +C  R C  + LS + +C    PLNSLC
Sbjct: 184 LKNPSQSC-SRDCESENLSKDTSCMKAVPLNSLC 216


>AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical
           protein F56B3.2a protein.
          Length = 432

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 520 LSAPKTNCYGRLCILQGLSNEANCKTDEPLNSLC 621
           L  P  +C  R C  + LS + +C    PLNSLC
Sbjct: 321 LKNPSQSC-SRDCESENLSKDTSCMKAVPLNSLC 353


>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 615 PLPMRNKSTRNAPAGGEAQPTP 680
           P+P RN++TR A  G E  P P
Sbjct: 73  PVPPRNRTTRQAYGGPEVNPAP 94


>V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-1 coding for a collagen.
           ).
          Length = 296

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 615 PLPMRNKSTRNAPAGGEAQPTP 680
           P+P RN++TR A  G E  P P
Sbjct: 68  PVPPRNRTTRQAYGGPEVNPAP 89


>J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 1 (col-1) gene, complete
           cds. ).
          Length = 296

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 615 PLPMRNKSTRNAPAGGEAQPTP 680
           P+P RN++TR A  G E  P P
Sbjct: 68  PVPPRNRTTRQAYGGPEVNPAP 89


>Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical
           protein E03G2.4 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/72 (27%), Positives = 25/72 (34%)
 Frame = +1

Query: 271 PSTGGHLTKLWPKSSLRRSSFDQLPTRAN*TGARSYLHDAATDQRPQVPSGARGRGNLGD 450
           P   G   K   K    R     LP      G    +     + RP +P    G+G  G 
Sbjct: 191 PGEPGRQGKQGRKGPPGRPGGSGLPGDKGLPGLPGSMGPVGPEGRPGIPGLPGGKGIPGK 250

Query: 451 FVLVRGAEGSPG 486
            + V G EG PG
Sbjct: 251 LIEVAGLEGPPG 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,536,801
Number of Sequences: 27780
Number of extensions: 360250
Number of successful extensions: 1102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)