Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20116
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64000.1 68418.m08036 3'(2'),5'-bisphosphate nucleotidase, pu...    29   2.2  
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai...    28   5.2  
At4g35830.1 68417.m05090 aconitate hydratase, cytoplasmic / citr...    28   6.8  
At2g46110.1 68415.m05735 ketopantoate hydroxymethyltransferase f...    27   9.0  
At2g20950.4 68415.m02474 expressed protein                             27   9.0  
At2g20950.3 68415.m02473 expressed protein                             27   9.0  
At2g20950.2 68415.m02472 expressed protein                             27   9.0  
At2g20950.1 68415.m02471 expressed protein                             27   9.0  
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p...    27   9.0  
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p...    27   9.0  

>At5g64000.1 68418.m08036 3'(2'),5'-bisphosphate nucleotidase,
           putative / inositol polyphosphate 1-phosphatase,
           putative similar to SP|Q42546 3'(2'),5'-bisphosphate
           nucleotidase (EC 3.1.3.7) {Arabidopsis thaliana};
           contains Pfam profile PF00459: Inositol monophosphatase
           family
          Length = 347

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +3

Query: 3   ARGDFTVQPKSSVKAGRRIFCPAVWNSNSPVNVTLMLYKEQMASQIVCQQSVQPQTLSLN 182
           A+   T+  + S +  + +    VW  +    VT   Y  Q    +V ++ +QP  LSL 
Sbjct: 10  AKKAVTLAARLSQEVQKTLLQSQVWKKSDRSPVTAADYGSQAVVSLVLERELQPDKLSLV 69

Query: 183 AITEFCDL 206
           A  E  DL
Sbjct: 70  AEEETGDL 77


>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
           Pfam PF04833: Phytochelatin synthetase-like conserved
           region
          Length = 653

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/52 (25%), Positives = 18/52 (34%)
 Frame = -3

Query: 250 CTKSSPSSPNCCLGTKSQNSVMAFRLSVCGCTDCWQTICEAICSLYSMRVTL 95
           C  + P+ P CC+   S  +        C C  C        CS  S  + L
Sbjct: 402 CNITQPTPPKCCVSFSSYFNDSVIPCKTCACGGCSSDRVARTCSTTSPALPL 453


>At4g35830.1 68417.m05090 aconitate hydratase, cytoplasmic / citrate
           hydro-lyase / aconitase (ACO) identical to SP|Q42560
           Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate
           hydro-lyase) (Aconitase) {Arabidopsis thaliana};
           contains Pfam profiles PF00330: Aconitase family
           (aconitate hydratase), PF00694: Aconitase C-terminal
           domain
          Length = 898

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 12  DFTVQPKSSVKAGRRIFCPAVWNSNSPV 95
           DF  QP  + K G++IF   +W SN  V
Sbjct: 573 DFETQPIGTGKDGKQIFFRDIWPSNKEV 600


>At2g46110.1 68415.m05735 ketopantoate hydroxymethyltransferase
           family protein similar to SP|Q9Y7B6
           3-methyl-2-oxobutanoate hydroxymethyltransferase (EC
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
           {Emericella nidulans}; contains Pfam profile PF02548:
           Ketopantoate hydroxymethyltransferase
          Length = 347

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 60  FCPAVWNSNSPVNVTLMLYKEQMASQIVCQQSVQPQTLSLNAITEFCDLVPRQQFGED 233
           FC    N    +N  LM YKE+++ ++    S  P  ++ + +  F  L   Q+ G D
Sbjct: 275 FCKQYANVGEVINKALMEYKEEVSKKVFPGPSHSPYKITASELDGF--LTELQKLGFD 330


>At2g20950.4 68415.m02474 expressed protein
          Length = 530

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 299 YGQSLRSVEALSTNSQLVPTEQVHEAIFMMLQLINGLKCLQARGVEEISETLS 457
           Y   + SVE      Q  P E   E+    +Q I  ++ LQ+ G EEI   +S
Sbjct: 292 YKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAIS 344


>At2g20950.3 68415.m02473 expressed protein
          Length = 505

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 299 YGQSLRSVEALSTNSQLVPTEQVHEAIFMMLQLINGLKCLQARGVEEISETLS 457
           Y   + SVE      Q  P E   E+    +Q I  ++ LQ+ G EEI   +S
Sbjct: 267 YKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAIS 319


>At2g20950.2 68415.m02472 expressed protein
          Length = 503

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 299 YGQSLRSVEALSTNSQLVPTEQVHEAIFMMLQLINGLKCLQARGVEEISETLS 457
           Y   + SVE      Q  P E   E+    +Q I  ++ LQ+ G EEI   +S
Sbjct: 265 YKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAIS 317


>At2g20950.1 68415.m02471 expressed protein
          Length = 520

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 299 YGQSLRSVEALSTNSQLVPTEQVHEAIFMMLQLINGLKCLQARGVEEISETLS 457
           Y   + SVE      Q  P E   E+    +Q I  ++ LQ+ G EEI   +S
Sbjct: 282 YKYQITSVETYEQERQFEPPELPDESQSFTMQEIARMRGLQSYGKEEIQLAIS 334


>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 909

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -3

Query: 127 ICSLYSMRVTLTGLLEFHTAGQNILLPALTDDFGCTVKSP 8
           +C L     T+ G L FH   Q   LPAL D F  T +SP
Sbjct: 10  VCGLGPEMRTVDGDLGFHGM-QTFYLPALLDQFPPTDQSP 48


>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 1187

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -3

Query: 127 ICSLYSMRVTLTGLLEFHTAGQNILLPALTDDFGCTVKSP 8
           +C L     T+ G L FH   Q   LPAL D F  T +SP
Sbjct: 10  VCGLGPEMRTVDGDLGFHGM-QTFYLPALLDQFPPTDQSP 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,815,137
Number of Sequences: 28952
Number of extensions: 339196
Number of successful extensions: 1091
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)