Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20115
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 64 3e-11
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 31 0.19
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 29 0.58
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 28 1.8
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 1.8
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 3.1
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 27 4.1
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 26 5.5
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 26 7.2
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 7.2
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 26 7.2
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 26 7.2
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 9.5
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.5
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1095
Score = 63.7 bits (148), Expect = 3e-11
Identities = 29/60 (48%), Positives = 39/60 (65%)
Frame = +1
Query: 511 DIIEFGGPACVKYQDIFLEPMLNALRESEPEVRQAAAYGCGVLAQFGDVQFAAACARAVP 690
D+IEF GP Y+D FL + ++ SEPE+RQAA+YG GV AQ G +A C+ A+P
Sbjct: 894 DLIEFTGPDSWNYKDHFLPYLAEGIQSSEPEIRQAASYGIGVAAQHGGELYAEICSSALP 953
Score = 30.3 bits (65), Expect = 0.33
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 21 LPYLLEC---ARIRGPQYIQGMWAYIVPELLKAIDSEPEQEVQVELLNSLAKCIELLGMG 191
+P LL A R P + +W I+ +LL I +EP E+ + + +E+ G+
Sbjct: 730 IPQLLNARILASNRDPAKVNELWEPILRKLLDHIQNEPSVEMLADYFECFYQSLEISGLN 789
Query: 192 CLSNNEMMAEVLRI 233
LS + M A V +
Sbjct: 790 -LSPSSMEALVAAV 802
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +1
Query: 550 QDIFLEPMLNALRESEPEVRQAAAYGCGVLAQF 648
+D+F + AL +SE EVR AAY G+L QF
Sbjct: 893 RDVF-SLFMAALEDSEGEVRSNAAYSMGLLCQF 924
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 29.5 bits (63), Expect = 0.58
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 641 HSLVTYSLQPPAHELYLFLA 700
H L+ Y L PPAH+ YL+ A
Sbjct: 527 HQLMLYDLYPPAHQTYLWKA 546
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 209 DDGRSLAYSQQTIN*NFERATERRQKRADEDYDEVLEEQLAD 334
D + LA +Q +N F+ E R D D DE++E+ LA+
Sbjct: 1051 DPRKKLAARKQKLNSAFKSNEEGRLLINDSDEDELIEDSLAN 1092
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 356 SLSRVADVLHALMSAYRDSFYPHFDTLLPHLVQ 454
SLS + DV+HAL S ++ P+ ++ L +L+Q
Sbjct: 737 SLSCLGDVIHALGSGKEGTYIPYRNSKLTNLLQ 769
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/35 (25%), Positives = 23/35 (65%)
Frame = +2
Query: 215 GRSLAYSQQTIN*NFERATERRQKRADEDYDEVLE 319
G+S+ Y++Q +FE E +++ +E+Y+ +++
Sbjct: 176 GKSVNYNEQEFYDDFEDEEEEVEEQVEEEYEPIID 210
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 293 DEDY-DEVLEE-QLADEDNEDVYSLSRVADVLHALMSAYRDSFYPHFDTLLPHLVQLLAP 466
D+DY + VLEE Q + + N + + V + + S + H DTLLP +++ +
Sbjct: 828 DDDYVNAVLEEVQSSLQSNNQEIARAAVGFIKMYITSFTKSKVLFHLDTLLPLILRWIKE 887
Query: 467 NRPY 478
+ Y
Sbjct: 888 HNAY 891
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 263 RATERRQKRADEDYDEVLEEQLADEDNED 349
R E R++ +E+Y+ +E ++E+NE+
Sbjct: 931 REAEERRRAEEEEYERSQQESSSNEENEN 959
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 281 QKRADEDYDEVLEEQLADEDNEDV 352
+KRA +D D+VL +++NE+V
Sbjct: 23 RKRAHDDLDDVLSSSSDEDNNENV 46
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 326 LADEDNEDVYSLSRVADVLHALMSAYRDSFYPHFD 430
+ DED + Y+L+ D+LH + DSF+P+ +
Sbjct: 54 IIDEDFAEDYNLT--VDILHRPLQENFDSFFPNVE 86
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +3
Query: 153 NSLAKCIELLGMGC-----LSNNEMMAEVLRILNKLL 248
+S AKCIEL+ G L NE+ E + ++N++L
Sbjct: 378 SSQAKCIELISKGAYPIEPLLENEISEEGIDLINRML 414
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 272 ERRQKRADEDYDEVLEEQLADEDNE 346
E+RQ+ DE+ D+ LEE +E +E
Sbjct: 140 EQRQEMIDENMDDALEEDDEEEADE 164
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 592 IHVMHSTLAPGIYLDTSHKQDLRILLCHKNTNGPLAI 482
IHV A IY++ + + + HK+ NG +AI
Sbjct: 280 IHVYDLETAKCIYMNRVSGESIFVTTAHKSVNGLMAI 316
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 260 ERATERRQKRADE-DYDEVLEEQLADEDNEDVYSLS 364
++ E +K AD+ DE+ E+QLA +++D +S+S
Sbjct: 36 QKNEELEKKAADKISRDELPEKQLAQSNDKDKHSVS 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,351
Number of Sequences: 5004
Number of extensions: 63753
Number of successful extensions: 249
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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