Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20115
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 54 1e-07
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 51 9e-07
03_05_1012 + 29670310-29670512,29670856-29671001,29671169-296712... 29 3.3
03_05_0549 - 25444234-25446792 29 3.3
08_01_0242 - 2007601-2007677,2007792-2007843,2008117-2008188,200... 29 4.3
03_05_0953 + 29111030-29111105,29112250-29113520 29 4.3
02_02_0288 - 8603033-8603436,8603611-8603862,8604530-8605022 29 5.7
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180... 28 7.6
01_06_0505 - 29871692-29872198,29878940-29879359 28 7.6
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 28 10.0
03_06_0477 + 34210844-34211356 28 10.0
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806... 28 10.0
01_07_0233 + 42191465-42191953,42191976-42192272,42192310-42192690 28 10.0
01_06_0100 - 26424769-26425545,26425666-26425697,26425778-264258... 28 10.0
>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 54.4 bits (125), Expect = 1e-07
Identities = 26/82 (31%), Positives = 44/82 (53%)
Frame = +2
Query: 263 RATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRDSFYPHFDTLLP 442
R ER + ED+D E+ L +E+ ++ ++ D L L+ ++ F P FD L
Sbjct: 763 RRRERTDRAKAEDFDSEEEDLLREENEQEDEIFDQIGDCLGTLVKTFKTYFLPFFDELSV 822
Query: 443 HLVQLLAPNRPYSDRQWAICIF 508
+L +LA ++ +R+ AICIF
Sbjct: 823 YLTPMLAKDKTVEERRIAICIF 844
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +1
Query: 505 FYDIIEFGGPACVKYQDIFLEPMLNALRESEPEVRQAAAYGCGVLAQFGDVQF 663
F D+ E A V+Y D +L +L A P++RQAA YG G+ A+FG F
Sbjct: 844 FDDVAEHCREAAVRYYDTYLPSLLEACTSENPDIRQAAVYGIGICAEFGGSAF 896
Score = 37.5 bits (83), Expect = 0.012
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +3
Query: 51 RGPQYIQGMWAYIVPELLKAIDSEPEQEVQVELLNSLAKCIELLG 185
R Y++ + YIVP L++AI EP+ ++ +L SL + I+L G
Sbjct: 694 RDESYLKQLSDYIVPALVEAIHKEPDTQICASMLESLNESIQLSG 738
>07_03_0997 - 23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 51.2 bits (117), Expect = 9e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Frame = +2
Query: 263 RATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRDSFYPHFDTLLP 442
R ER ++ ED+D E L +E+ ++ +V + L L+ ++ SF P FD L
Sbjct: 832 RKRERSERSKAEDFDADEGELLKEENEQEEEVFDQVGECLGTLIKTFKASFLPFFDELSV 891
Query: 443 HLVQLLAPNRPYSDRQWAICIF 508
++ +L ++ +R+ AICIF
Sbjct: 892 YITPMLGKDKTAEERRIAICIF 913
Score = 44.8 bits (101), Expect = 8e-05
Identities = 24/61 (39%), Positives = 32/61 (52%)
Frame = +1
Query: 505 FYDIIEFGGPACVKYQDIFLEPMLNALRESEPEVRQAAAYGCGVLAQFGDVQFAAACARA 684
F DI E + +KY D +L +L A + +VRQAA YG GV A+FG F A
Sbjct: 913 FDDIAEQCRESALKYYDTYLPFLLEASNDENSDVRQAAVYGVGVCAEFGGHVFRPLVGEA 972
Query: 685 V 687
+
Sbjct: 973 L 973
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/82 (29%), Positives = 46/82 (56%)
Frame = +3
Query: 42 ARIRGPQYIQGMWAYIVPELLKAIDSEPEQEVQVELLNSLAKCIELLGMGCLSNNEMMAE 221
A+ R Y++ + YI+P L++A+ EPE E+ +L+SL +C++L G L N++ A
Sbjct: 760 AQGRDESYVKQLSDYIIPALVEALHKEPETEMCSSMLDSLNECMQLSGR-LLDENQVRAV 818
Query: 222 VLRILNKLLTEISNGLLKGDKS 287
I N ++ + + ++S
Sbjct: 819 SDEIKNVIIASATRKRERSERS 840
>03_05_1012 +
29670310-29670512,29670856-29671001,29671169-29671245,
29671329-29671451,29671558-29671660,29672100-29672173,
29672249-29672329,29672411-29672563,29672780-29672881
Length = 353
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 204 NEMMAEVLRILNKLLTEISNGLLKGDKSV 290
N++ A V+ +NKL++E+S+G + DK V
Sbjct: 257 NQLCANVVYTINKLMSEVSDGNILEDKCV 285
>03_05_0549 - 25444234-25446792
Length = 852
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/66 (36%), Positives = 31/66 (46%)
Frame = +1
Query: 562 LEPMLNALRESEPEVRQAAAYGCGVLAQFGDVQFAAACARAVPLFGALSQSRTHALLKRS 741
L+P+L L EP+ R A A G LA D + AA +A PL + RT A +
Sbjct: 300 LQPLLTRLLRGEPDTRVAMADYLGELALANDDK-AAVAEQAGPLL--VGMLRTGATPAKE 356
Query: 742 MQLKML 759
LK L
Sbjct: 357 ATLKAL 362
>08_01_0242 -
2007601-2007677,2007792-2007843,2008117-2008188,
2008710-2009219
Length = 236
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = -3
Query: 719 VRLCDNAPKRGTARAQAAANCTSPNCASTPQP*AAA*RTSGSDSRNA 579
VRL +N P A AAAN +P+ + PQP AAA +G+ + A
Sbjct: 94 VRLSNNYPDPLNPAAAAAAN-PNPDDPAQPQPGAAAAAAAGAPAAQA 139
>03_05_0953 + 29111030-29111105,29112250-29113520
Length = 448
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 713 LCDNAPKRGTARAQAAANCTSPNCASTPQ 627
LC TAR AAA C+SP+ A +P+
Sbjct: 402 LCAPGTATTTARGAAAAACSSPSAAESPR 430
>02_02_0288 - 8603033-8603436,8603611-8603862,8604530-8605022
Length = 382
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +2
Query: 260 ERATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRD 409
++ T +++ D D ++ EE++ D D+ED R+++V A++ ++D
Sbjct: 220 KKCTNASRRKDDNDDEDTDEEEIDDSDDED-----RISEVQAAVVQLFQD 264
>04_04_1242 - 32016553-32016857,32017628-32017784,32017871-32018089,
32018184-32018470,32018629-32019934,32020021-32020178,
32020250-32020335,32023106-32023173,32023297-32023340,
32023418-32023490,32023605-32023684,32023774-32023867,
32023981-32024151,32024463-32024557,32025049-32025128,
32025137-32025333,32025896-32026183
Length = 1235
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 135 VQVELLNSLAKCIELLGMGCLSNNEMMAEVLRILNKLLTEISNGLLK 275
+Q+E+L S AKC L+ ++ AE +R LN L + + + K
Sbjct: 1184 LQIEILESKAKCTALVSQASGVEDQKCAEDIRQLNDKLESMQSLVTK 1230
>01_06_0505 - 29871692-29872198,29878940-29879359
Length = 308
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 27 YLLECARIRGPQYIQGMWAYIVPELLKAIDSEPEQEVQVELLNSL 161
Y C R++ QG+W I P A+D +++ + LL SL
Sbjct: 31 YTSWCIRVQAMMEDQGVWDAIEPAAGVAVDPRRDKKARSHLLQSL 75
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Frame = +2
Query: 263 RATERRQKRADEDYDEVLEEQL-----ADEDNED 349
R+ RRQK D+DY+E EE DED+E+
Sbjct: 109 RSRRRRQKDDDDDYEEEEEEDADFDPDVDEDDEE 142
>03_06_0477 + 34210844-34211356
Length = 170
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 607 RQAAAYGCGVLAQFGDVQFAA-ACARAVPLFGALSQSRTHALLKRSMQLKM 756
R+ A V+A G+ +F C+RA P F AL RT L RS L +
Sbjct: 37 RRKRARRRSVVATSGEGEFVCKTCSRAFPTFQALGGHRTSHLRGRSNGLDL 87
>03_04_0034 +
16679624-16679940,16679980-16680199,16680319-16680624,
16680703-16681044,16681066-16681257,16681533-16681684,
16681803-16681974,16682017-16682338,16682414-16682862
Length = 823
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 209 DDGRSLAYSQQTIN*NFERATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVL 382
DD +S Y + +E + RR KR +++ DE++ + D+D+ VY + R++ +
Sbjct: 460 DDDQS-GYVEDDDQSGYEES-HRRLKRWEDEIDELIIALMDDDDDGYVYGMYRMSPTM 515
>01_07_0233 + 42191465-42191953,42191976-42192272,42192310-42192690
Length = 388
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 608 VKPRPTVAAC*HSLVTYSLQPPAHELYLFLAHCRRAGRTLS*KDQCN*KCYIAVAKISNT 787
V+P+P A + + PPA +LY + H + L D N K ++ V + N
Sbjct: 221 VRPQPRAADTIAMIPIIRMPPPAVKLYAYFHHLVESAAELLLVDTVN-KVFVPVRSLGNR 279
Query: 788 IIAINR 805
+ +++
Sbjct: 280 SLFVSQ 285
>01_06_0100 -
26424769-26425545,26425666-26425697,26425778-26425894,
26426067-26426118,26426229-26426281,26426883-26427585
Length = 577
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 260 ERATERR-QKRADEDYDEVLEEQLADEDNEDVY 355
+R +RR K DEDYD V ++ DED++D Y
Sbjct: 413 KRTMKRRTMKEEDEDYDPVHDD---DEDDDDEY 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,992,026
Number of Sequences: 37544
Number of extensions: 441006
Number of successful extensions: 1372
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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