Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20115
(805 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23) 86 4e-17
SB_31985| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.051
SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4) 36 0.051
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05) 33 0.27
SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10) 33 0.27
SB_47183| Best HMM Match : zf-C3HC4 (HMM E-Value=3) 31 1.1
SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24) 31 1.1
SB_29630| Best HMM Match : Sigma54_activat (HMM E-Value=1) 30 2.5
SB_15634| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_49390| Best HMM Match : HEAT (HMM E-Value=2e-08) 29 3.3
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 29 3.3
SB_36213| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.033) 29 3.3
SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0) 29 4.4
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0) 29 4.4
SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09) 28 7.7
SB_37525| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
Length = 940
Score = 85.8 bits (203), Expect = 4e-17
Identities = 37/76 (48%), Positives = 55/76 (72%), Gaps = 2/76 (2%)
Frame = +3
Query: 9 AAESLPYLLECARIRGPQYIQGMWAYIVPELLKAIDSEPEQEVQVELLNSLAKCIELLGM 188
AAES PYLLECA+ +G ++ MWAYI +LLKA+ SEP+ ++Q+ L + AKC+E LG
Sbjct: 760 AAESFPYLLECAKFKGEAAVRQMWAYICSDLLKAVRSEPDSDIQIIFLENFAKCVETLGN 819
Query: 189 GCLSNN--EMMAEVLR 230
GCL+ + M+ E+++
Sbjct: 820 GCLTLDFFNMLVEIIQ 835
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Frame = +2
Query: 236 QQTIN*NFERATERRQKRADEDYDEVLEEQLADEDNEDV-------------YSLSRVAD 376
Q+ + + ER ER+ KR DEDYDE +E+ L DE DV + ++++AD
Sbjct: 835 QEVLRAHRERQLERQNKRKDEDYDEEVEQDLQDEHETDVEILSKTKLTQLICFPMNQIAD 894
Query: 377 VLHALMSAYRDSFYPHFDTLLPHLVQLLAPNR 472
V+HA++ +++ P ++ LL L+ ++
Sbjct: 895 VMHAVLGTHKEEAIPFWERLLQDFHALIVSSQ 926
>SB_31985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 51.2 bits (117), Expect = 1e-06
Identities = 17/52 (32%), Positives = 35/52 (67%)
Frame = +2
Query: 353 YSLSRVADVLHALMSAYRDSFYPHFDTLLPHLVQLLAPNRPYSDRQWAICIF 508
+ ++++ADV+HA++ +++ P ++ LL L+AP R +D+QW +C+F
Sbjct: 17 FPMNQIADVMHAVLGTHKEEAIPFWERLLQDFHALIAPERSEADKQWGLCVF 68
>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1232
Score = 35.5 bits (78), Expect = 0.051
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +2
Query: 263 RATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRDSFY 418
RATE R K +Y+EV E Q + N DV + V DV H+ RD+F+
Sbjct: 756 RATELRLKALGYNYEEVWECQFDAQLNNDVQLQALVGDVEHSRPLEPRDAFF 807
>SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)
Length = 248
Score = 35.5 bits (78), Expect = 0.051
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +3
Query: 654 RTVCSRLRTSCTSFWRIVAEPDARSLEKINATENAI 761
R CSR + R++ +P +RS E INATENAI
Sbjct: 19 RQKCSRETDALPLLVRVINDPQSRSRENINATENAI 54
>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1388
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +2
Query: 263 RATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRDSFY 418
RATE R K +Y+EV E Q N DV + V +V H++ RD+F+
Sbjct: 898 RATELRLKALGYNYEEVWECQFDARLNSDVQLQALVGEVEHSIPLNPRDAFF 949
>SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)
Length = 1119
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +2
Query: 263 RATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRDSFY 418
RATE R K +Y+EV E Q N DV + V +V H++ RD+F+
Sbjct: 649 RATELRLKALGYNYEEVWECQFDARLNSDVKLQAIVGEVEHSVPLNPRDAFF 700
>SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)
Length = 1378
Score = 33.1 bits (72), Expect = 0.27
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 263 RATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRDSFY 418
RATE R + +Y+EV E Q N DV + V +V H++ RD+F+
Sbjct: 888 RATELRLRALGYNYEEVWECQFDARLNSDVQLQALVGEVEHSIPLNPRDAFF 939
>SB_47183| Best HMM Match : zf-C3HC4 (HMM E-Value=3)
Length = 196
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 263 RATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRDSFY 418
RATE R + +Y+EV E Q + DV + V +V H++ RD+F+
Sbjct: 9 RATELRLRALGYNYEEVWECQFDARLSSDVQLQALVGEVEHSIPLNPRDAFF 60
>SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)
Length = 1575
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 263 RATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRDSFY 418
RATE R + +Y+EV E Q + DV + V +V H++ RD+F+
Sbjct: 812 RATELRLRALGYNYEEVWECQFDARLSSDVQLQALVGEVEHSIPLNPRDAFF 863
>SB_29630| Best HMM Match : Sigma54_activat (HMM E-Value=1)
Length = 1118
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 263 RATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVLHA 388
RATE R + +Y+EV E Q + N DV S V DV H+
Sbjct: 168 RATELRLRGLGYNYEEVGECQFDAQLNSDVQLQSLVGDVEHS 209
>SB_15634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 293 DEDYDEVLEEQLADEDNEDVYSLSRVADVLHA--LMSAYRDSFYPHFDTLLPHLVQLLAP 466
DED+DEV ++ D+ NE S SR D + L+ Y S + L L++
Sbjct: 46 DEDFDEVFWRKVRDKYNESEMSWSRAMDEVRVEQLVEKYESSGNKLSEVPLLVLLKRWPT 105
Query: 467 NRPYSD 484
R Y D
Sbjct: 106 KRKYRD 111
>SB_49390| Best HMM Match : HEAT (HMM E-Value=2e-08)
Length = 433
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 580 ALRESEPEVRQAAAYGCGVLAQFG 651
AL++S+ EVR A YG G+LA G
Sbjct: 393 ALKDSDDEVRSNATYGLGLLAMNG 416
>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
Length = 1139
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 484 SPVGHLYFYDIIEFGGPACV--KYQDIFLEPMLNALRESEPEVRQAAAYGCGVLAQ 645
S V L +D+ F C KY D + +LNAL+ E + + A GC ++ +
Sbjct: 871 SDVALLRDFDVPGFLDDICTADKYNDATPDDVLNALQMLESSMNMSRAQGCSIIEE 926
>SB_36213| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.033)
Length = 708
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 263 RATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRDSFY 418
RA E R K +Y+EVLE Q + N + V DV H RD+F+
Sbjct: 521 RAVELRLKAQGYNYEEVLECQFDVQLNTQRELRALVGDVEHGKPLEARDAFF 572
>SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 712
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 254 NFERAT-ERRQKRADEDYDEVLEEQLADEDNEDVYSLSR 367
N+ R T E+RQK D E+ E+L DE+ E +SL +
Sbjct: 10 NWTRKTSEKRQKNRRLDLKELAIEELQDEEPESKFSLRK 48
>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1457
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 254 NFERAT-ERRQKRADEDYDEVLEEQLADEDNEDVYSLSR 367
N+ R T E+RQK D E+ E+L DE+ E +SL +
Sbjct: 267 NWTRKTSEKRQKNRRLDLKELAIEELQDEEPESKFSLRK 305
>SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 29.1 bits (62), Expect = 4.4
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +2
Query: 164 QMYRTFGHGLPF*-Q*DDGRSLAYSQQTIN*NFERATERRQKRADEDYDEVLEEQLADED 340
Q + F HG P Q D L + RA+E R + +Y+EV E Q +
Sbjct: 596 QYHGCFYHGCPICFQADTINPLTNTTMQELREHTRASELRLRALGYNYEEVWECQFDAQL 655
Query: 341 NEDVYSLSRVADVLHALMSAYRDSFY 418
N D + V +V H+ RD+F+
Sbjct: 656 NSDPKLRTLVGEVEHSKPLEARDAFF 681
>SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)
Length = 1396
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 263 RATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRDSFY 418
RA E R K +Y+EV E Q + N + V DV H RD+F+
Sbjct: 904 RAVELRLKAQGYNYEEVWECQFDAQLNTQPELRALVGDVEHGKPMEARDAFF 955
>SB_37525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 734 FKRACVRLCDNAPKRGTARAQAAANCTSPNCASTPQ 627
+ R C+RLC P ++++ AN NCA P+
Sbjct: 12 YGRTCMRLCSGDPSEKPSKSR-PANLIGENCAVCPR 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,306,832
Number of Sequences: 59808
Number of extensions: 517085
Number of successful extensions: 1574
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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