Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20115
(805 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta... 41 0.001
U41278-4|AAK31513.3| 928|Caenorhabditis elegans Hypothetical pr... 30 2.2
AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical ... 29 5.1
AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical ... 28 6.8
AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein. 28 6.8
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 28 9.0
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 28 9.0
>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
family protein 3 protein.
Length = 1092
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/84 (21%), Positives = 41/84 (48%)
Frame = +2
Query: 254 NFERATERRQKRADEDYDEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRDSFYPHFDT 433
N+ + R ++D D +E+L + L ++D+ H+LM ++ + +
Sbjct: 793 NYGKRMSDRPVEDEDDDDAEAKEELDYFMELEASCLGAISDLTHSLMKEFKGTIFEGMIN 852
Query: 434 LLPHLVQLLAPNRPYSDRQWAICI 505
+ +QL+ ++ Y +RQW +C+
Sbjct: 853 VFNCAIQLIEGSKQYFERQWGMCL 876
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/79 (21%), Positives = 39/79 (49%)
Frame = +3
Query: 9 AAESLPYLLECARIRGPQYIQGMWAYIVPELLKAIDSEPEQEVQVELLNSLAKCIELLGM 188
+AE +P LL C +G + +W + L +++ E + E+ + ++ CIE++
Sbjct: 713 SAEIMPCLLTCVEKQGLADKRRLWCEFLKALTTSMEEEDDVEILASFMTTIGSCIEVMKT 772
Query: 189 GCLSNNEMMAEVLRILNKL 245
++ E+ + +L +L
Sbjct: 773 EGIAEEEVQLIISVLLKQL 791
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 511 DIIEFG-GPACVKYQDIFLEPMLNALRESEPEVRQAAAYGCGVLA 642
D IEFG G ++ + + M L + PEVRQAA+YG GV+A
Sbjct: 879 DAIEFGVGHMPTRFPKL-IPIMYKLLGDEYPEVRQAASYGFGVMA 922
>U41278-4|AAK31513.3| 928|Caenorhabditis elegans Hypothetical
protein F33G12.5 protein.
Length = 928
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +2
Query: 263 RATERRQKRADEDYDEVLEEQLADEDNEDVY-----SLSRVADVLHALMSAYRDSF 415
RA RR +E DE++ + DE+ ++ ++ RV D LHA A R++F
Sbjct: 594 RADLRRSNTHNEQMDEIMRQNAEDENQNSIHVELTQAVGRVQD-LHAENEALREAF 648
>AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical
protein Y17G7B.5a protein.
Length = 881
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 305 DEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRDSFYPHFD 430
D++ +QL DED + + LS+ ++ + S+ S Y H D
Sbjct: 424 DKMASDQLTDEDIKAIRELSQDPNISQRVFSSIAPSIYGHDD 465
>AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical
protein Y44F5A.1 protein.
Length = 383
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +2
Query: 278 RQKRADEDYDEVLEEQLADEDNED 349
+++R DED DE ++E+ +ED+E+
Sbjct: 354 KKRRNDEDSDEEIDEEEQEEDDEE 377
>AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein.
Length = 383
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +2
Query: 278 RQKRADEDYDEVLEEQLADEDNED 349
+++R DED DE ++E+ +ED+E+
Sbjct: 354 KKRRNDEDSDEEIDEEEQEEDDEE 377
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +2
Query: 254 NFERATERRQKRADEDYDEVLE--EQLADEDNEDVYSLSRVADVLHALMSAYRDSFYPHF 427
N E+A ++ ++A D E LE +Q +E N+ VLH+ + A RD Y H
Sbjct: 1138 NKEKAARQKAEKARRDMAEELESYKQELEESNDKT--------VLHSQLKAKRDEEYAHL 1189
Query: 428 DTLLPHLVQ 454
L V+
Sbjct: 1190 QKQLEETVK 1198
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +2
Query: 254 NFERATERRQKRADEDYDEVLE--EQLADEDNEDVYSLSRVADVLHALMSAYRDSFYPHF 427
N E+A ++ ++A D E LE +Q +E N+ VLH+ + A RD Y H
Sbjct: 1138 NKEKAARQKAEKARRDMAEELESYKQELEESNDKT--------VLHSQLKAKRDEEYAHL 1189
Query: 428 DTLLPHLVQ 454
L V+
Sbjct: 1190 QKQLEETVK 1198
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +2
Query: 290 ADEDYDEVLEEQLADEDNEDVYSLSRVADVLHALMSAYRDSFY 418
+D++ DE+ +E+L D+ E + AD+L A+ +++ D +Y
Sbjct: 1046 SDDEEDELDDEKLLDKLFEKMNLECSGADILSAVHASHADEYY 1088
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,792,197
Number of Sequences: 27780
Number of extensions: 378284
Number of successful extensions: 1224
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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