Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20114
         (709 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius...    46   7e-04
UniRef50_Q49549 Cluster: P3; n=1; Mycoplasma hyorhinis|Rep: P3 -...    40   0.045
UniRef50_Q6CAD5 Cluster: Similarity; n=2; Yarrowia lipolytica|Re...    38   0.32 
UniRef50_Q0J1G4 Cluster: Os09g0441900 protein; n=2; Oryza sativa...    36   1.3  
UniRef50_A3ZU56 Cluster: Putative uncharacterized protein; n=1; ...    35   1.7  
UniRef50_UPI00006614B8 Cluster: Homolog of Homo sapiens "Keratin...    34   3.0  
UniRef50_Q12IA3 Cluster: Putative uncharacterized protein precur...    33   5.2  
UniRef50_A7RVT7 Cluster: Predicted protein; n=1; Nematostella ve...    33   9.1  

>UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius
          melpomene|Rep: Ribosomal protein L23a - Heliconius
          melpomene
          Length = 221

 Score = 46.4 bits (105), Expect = 7e-04
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +1

Query: 16 MPPKKQPEKSGSSGSKPAEKKP 81
          MPPKKQPEKSGS+ +KPAEKKP
Sbjct: 1  MPPKKQPEKSGSAAAKPAEKKP 22



 Score = 39.1 bits (87), Expect = 0.10
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +1

Query: 445 SKPAEKKTASAPTAKPGSAKA 507
           +KPAEKK A+AP+AKPGSAKA
Sbjct: 79  AKPAEKKPAAAPSAKPGSAKA 99


>UniRef50_Q49549 Cluster: P3; n=1; Mycoplasma hyorhinis|Rep: P3 -
           Mycoplasma hyorhinis
          Length = 1187

 Score = 40.3 bits (90), Expect = 0.045
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 154 TCVSQNTGTCPESSCACPETSCACPESSL-CPESS 255
           +C  ++ G C E SCACP T+CAC E    C ES+
Sbjct: 380 SCAQEHCG-CQEESCACPNTTCACTEEHCECTEST 413



 Score = 40.3 bits (90), Expect = 0.045
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 154 TCVSQNTGTCPESSCACPETSCACPESSL-CPESS 255
           +C  ++ G C E SCACP T+CAC E    C ES+
Sbjct: 836 SCAQEHCG-CQEESCACPNTTCACTEEHCECTEST 869



 Score = 33.5 bits (73), Expect = 5.2
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 154 TCVSQN-TGTCPESSCACPETSCACPESS-LCPE 249
           TC  Q  T +C +  C C E SCACP ++  C E
Sbjct: 371 TCGCQEATCSCAQEHCGCQEESCACPNTTCACTE 404



 Score = 33.5 bits (73), Expect = 5.2
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 154 TCVSQN-TGTCPESSCACPETSCACPESS-LCPE 249
           TC  Q  T +C +  C C E SCACP ++  C E
Sbjct: 827 TCGCQEATCSCAQEHCGCQEESCACPNTTCACTE 860


>UniRef50_Q6CAD5 Cluster: Similarity; n=2; Yarrowia lipolytica|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 611

 Score = 37.5 bits (83), Expect = 0.32
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +1

Query: 166 QNTGTCPESSCACPETSCACPESSLCPESS 255
           + +   PE+S A PETS A PESS  PE+S
Sbjct: 126 ETSSAAPETSSAAPETSSAAPESSAAPETS 155



 Score = 34.3 bits (75), Expect = 3.0
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 166 QNTGTCPESSCACPETSCACPE-SSLCPESS 255
           + +   PE+S A PETS A PE SS  PESS
Sbjct: 119 ETSSAAPETSSAAPETSSAAPETSSAAPESS 149


>UniRef50_Q0J1G4 Cluster: Os09g0441900 protein; n=2; Oryza sativa
           (japonica cultivar-group)|Rep: Os09g0441900 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 444

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 154 TCVSQNTGTCPESSCACPETSCACPESSLCPESS 255
           +C   N   C   SC  P  SC+CP  S C ++S
Sbjct: 169 SCCKPNCSCCKTPSCCKPNCSCSCPSCSSCCDTS 202


>UniRef50_A3ZU56 Cluster: Putative uncharacterized protein; n=1;
           Blastopirellula marina DSM 3645|Rep: Putative
           uncharacterized protein - Blastopirellula marina DSM
           3645
          Length = 155

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 154 TCVSQNTGTCPESSCACPETSCACPESSLCP 246
           TC +      PE +C  PE SCA PE +  P
Sbjct: 94  TCCAPEPACAPEPTCCAPEPSCAAPEEAPAP 124


>UniRef50_UPI00006614B8 Cluster: Homolog of Homo sapiens
           "Keratin-associated protein 10-4; n=1; Takifugu
           rubripes|Rep: Homolog of Homo sapiens
           "Keratin-associated protein 10-4 - Takifugu rubripes
          Length = 353

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 136 FCKLY*TCVSQNTGTCPESSCACPETSCACPESSLCPES 252
           +C+   +C    +  CP +SC CP T C CP S  CP S
Sbjct: 154 YCRCPTSCWCPTSCRCP-TSCWCP-TYCRCPTSCRCPTS 190



 Score = 34.3 bits (75), Expect = 3.0
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 136 FCKLY*TCVSQNTGTCPESSCACPETSCACPESSLCPES 252
           +C+   +C    +  CP +SC CP T C CP S  CP S
Sbjct: 280 YCRCPTSCWCPTSCRCP-TSCWCP-TYCRCPTSCRCPTS 316


>UniRef50_Q12IA3 Cluster: Putative uncharacterized protein
           precursor; n=1; Shewanella denitrificans OS217|Rep:
           Putative uncharacterized protein precursor - Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
          Length = 149

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 163 SQNTGTCPESSCACPETSC 219
           SQN+G C E+SC CP +SC
Sbjct: 87  SQNSGDCCENSCRCPVSSC 105


>UniRef50_A7RVT7 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 121

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 181 CPESSCACPETSCACPESSL-CPES 252
           CP SS +CP  S +CP  SL CP S
Sbjct: 1   CPTSSLSCPTPSLSCPTPSLFCPTS 25


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,391,195
Number of Sequences: 1657284
Number of extensions: 4130597
Number of successful extensions: 16430
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16289
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)