Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20114
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.86 
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    29   0.86 
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.86 
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    28   1.5  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   6.1  

>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 633 PVFLGFVQSSI*KLLAWVWQFWLLL 559
           P+  GF+  S    + W W+FW+LL
Sbjct: 184 PIISGFISQSS---IGWQWEFWILL 205


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 633 PVFLGFVQSSI*KLLAWVWQFWLLL 559
           P+  GF+  S    + W W+FW+LL
Sbjct: 184 PIISGFISQSS---IGWQWEFWILL 205


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 633 PVFLGFVQSSI*KLLAWVWQFWLLL 559
           P+  GF+  S    + W W+FW+LL
Sbjct: 184 PIISGFISQSS---IGWQWEFWILL 205


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 642 SLNPVFLGFVQSSI*KLLAWVWQFWLLL 559
           ++ P+  GF+  S    ++W W+FW+LL
Sbjct: 178 AIAPIASGFIAGSS---ISWRWEFWILL 202


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 659 FTTFFCPLTQSFWASCNLQFRNC 591
           FT FF P  ++ WA C    R C
Sbjct: 344 FTIFFVPCARTLWAICR-HLRTC 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,426
Number of Sequences: 5004
Number of extensions: 16687
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)