Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20114
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0679 - 5933187-5933258,5933378-5933592,5934527-5934569           29   3.6  
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           29   3.6  

>08_01_0679 - 5933187-5933258,5933378-5933592,5934527-5934569
          Length = 109

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 202 CPETSCACPESSLCPE 249
           C  T+C CP  SLCP+
Sbjct: 40  CASTACRCPHLSLCPQ 55


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 160 VSQNTGTCPESSCACPETSCACPESS 237
           ++++  TCP + C CPE  C    +S
Sbjct: 116 ITEHEKTCPHAPCFCPEPGCGFAAAS 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,497,058
Number of Sequences: 37544
Number of extensions: 119445
Number of successful extensions: 475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)