Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20114
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47771| Best HMM Match : Annexin (HMM E-Value=0)                     31   0.69 
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  29   2.8  
SB_40384| Best HMM Match : Filament (HMM E-Value=0.76)                 29   3.7  
SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)        29   4.9  
SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37)        29   4.9  
SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)                   29   4.9  
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_47771| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 529

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 34 PEKSGSSGSKPAEKKPDNSQN 96
          P K  SS SKP E+KP +SQN
Sbjct: 12 PNKPASSSSKPDERKPSDSQN 32


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 154  TCVSQNTGTCPESSCACPETSCACPESSLCPES 252
            +C++  T  CP+  C+ P    + P SS CP S
Sbjct: 1876 SCLTLCTPDCPKKCCSKPTKVGSAPTSSQCPSS 1908


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 163  SQNTGTCPESSCACPETSCACPESSLCPESS 255
            S++  TC   S  CP+ S  CP+S++ P  +
Sbjct: 1006 SKDAVTCQNRSVTCPKYSVLCPDSNVEPNET 1036


>SB_40384| Best HMM Match : Filament (HMM E-Value=0.76)
          Length = 563

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 16 MPPKKQPEKSGSSGSKPAEKKPDNSQ 93
          MPPKK+ +KSG  G K   K    S+
Sbjct: 1  MPPKKKGKKSGKKGKKSGRKSRQKSR 26


>SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)
          Length = 184

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 442 TSKPAEKKTASAPTAKPGSAKA 507
           T KPA KK A+ P  KP + KA
Sbjct: 147 TKKPAAKKAAAKPAKKPAAKKA 168


>SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37)
          Length = 184

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 442 TSKPAEKKTASAPTAKPGSAKA 507
           T KPA KK A+ P  KP + KA
Sbjct: 147 TKKPAAKKAAAKPAKKPAAKKA 168


>SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)
          Length = 650

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 19  PPKKQPEKSGSSGSKPAEKKPDNS 90
           PP+K+ +  G +  +P +++PDNS
Sbjct: 40  PPRKKKKNRGMNRQRPRDQRPDNS 63


>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 139 CKLY*TCVSQNTGTCPESSCACPETSC 219
           C L   C SQ   TC + +C C  TSC
Sbjct: 183 CPLATPCASQFGITCRKLTCFCSRTSC 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,594,382
Number of Sequences: 59808
Number of extensions: 128915
Number of successful extensions: 618
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)