Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20114
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    28   5.7  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical p...    27   9.9  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 160 VSQNTGTCPESSCACPETSCACPESSLCPE 249
           +S  TG+  E+ CAC   +CAC      PE
Sbjct: 126 LSLRTGSSNENGCACVHGNCACCLEISVPE 155


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 4   HEVTMPPKKQPEKSGSSGSKPAEKKPDNSQNT 99
           HE + PP   P KS + GS P    P     T
Sbjct: 118 HEASPPPPPPPRKSRAGGSSPPPPPPPRVPRT 149


>Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical
           protein Y69H2.12 protein.
          Length = 528

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +1

Query: 139 CKLY*TCVSQNTGTCPESSCACPETSCA--CPESSLC 243
           C+   TCVS N+    E SC C +      C   +LC
Sbjct: 130 CRSGATCVSSNSSATTEYSCICTDQQFGTHCEYDNLC 166


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
           protein C08G9.2 protein.
          Length = 2224

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 166 QNTGTCPESSCACPETSCACPESSLCPESS 255
           + + +CP   C  P     CP+ S+C  SS
Sbjct: 638 RGSNSCPTCKCKNPCKEVKCPQGSVCVMSS 667


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,912,210
Number of Sequences: 27780
Number of extensions: 106884
Number of successful extensions: 481
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)