Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20114
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02650.1 68415.m00204 reverse transcriptase-related similar t...    29   3.0  
At4g21760.1 68417.m03149 glycosyl hydrolase family 1 protein con...    28   7.0  
At5g64670.1 68418.m08127 ribosomal protein L15 family protein          27   9.2  
At1g17130.1 68414.m02087 cell cycle control protein-related cont...    27   9.2  

>At2g02650.1 68415.m00204 reverse transcriptase-related similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278
          Length = 365

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 650 FFCPLTQSFWASCNLQFRNCW 588
           F CP TQS W S N+   N W
Sbjct: 90  FNCPYTQSVWRSANIIIGNQW 110


>At4g21760.1 68417.m03149 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to dalcochinin 8'-O-beta-glucoside
           beta-glucosidase precursor (GI:6118076) [Dalbergia
           cochinchinensis]
          Length = 535

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 172 TGTCPESSCACPETSCACPESSLCP 246
           TGT P S C+ P  +C+C +S + P
Sbjct: 232 TGTYPPSRCSKPFGNCSCGDSYIEP 256


>At5g64670.1 68418.m08127 ribosomal protein L15 family protein
          Length = 281

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 19  PPKKQPEKSGSSGSKPAEKKP 81
           PP KQ +K  S G  PA KKP
Sbjct: 244 PPPKQQDKVDSIGRLPAPKKP 264


>At1g17130.1 68414.m02087 cell cycle control protein-related
           contains similarity to Swiss-Prot:Q9P7C5 cell cycle
           control protein cwf16 [Schizosaccharomyces pombe]
          Length = 331

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +1

Query: 25  KKQPEKSGSSG---SKPAEKKPDNSQNT 99
           KKQP+ + SS    +KP EKK D + NT
Sbjct: 288 KKQPQPTSSSTPAPAKPEEKKSDGAANT 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,510,759
Number of Sequences: 28952
Number of extensions: 96653
Number of successful extensions: 388
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)