Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20113
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    28   1.2  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.0  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   6.6  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    26   6.6  

>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 323 IYYWLPGWKIPLHPV*HKSSQKENRSVHPS*YSRFGGRP 207
           +Y   PGWK+P   + H     EN   +     +F G P
Sbjct: 379 VYETFPGWKVPTTGITHWDQMPENAKKYIEFIEKFVGVP 417


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 14  NHFYFNTNIFRVLMH 58
           NHFY+NT +F   +H
Sbjct: 301 NHFYYNTKLFAAKVH 315


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 500 LFLIKQNTAAHPSVLKHKVEI*IILSTHQPHPLNCNA 390
           L L +Q T   PS++ HK  I     T + H  NCN+
Sbjct: 603 LILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNS 639


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 367 TGRWYFPTSLYF*RLYIIGFLAGRFPYTL-YNIKVLKKK 254
           +G W+F   L+F  L I G L G F   L + I+ L+KK
Sbjct: 364 SGSWHFFELLFFCFLGIFGGLYGEFVMRLFFLIQKLRKK 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,707
Number of Sequences: 5004
Number of extensions: 61120
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)