Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20113
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 30   2.3  
SB_49621| Best HMM Match : 7tm_1 (HMM E-Value=6e-12)                   29   4.0  
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)              28   7.0  

>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -1

Query: 459  LEA*GRNLNYIIHSPTPPFKL*RITVLGTNKQAGGTSPHHFISNVYILLASWLEDSLTPC 280
            L A G N  +IIH PTP  KL R+ +   N+   G SP   + +V +   +  +  + PC
Sbjct: 1347 LFARGNNDQFIIHVPTPLGKLLRVKIWHDNE---GNSPAWLLRSVTVHATNSEDRWVFPC 1403


>SB_49621| Best HMM Match : 7tm_1 (HMM E-Value=6e-12)
          Length = 316

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 175 FTKVKSFFLFIILYHTIPTIILFLYTISYIVIYKM 71
           F  + +  LF ++   I TI L L T+SY+ IYK+
Sbjct: 170 FLALNNILLFKVVGCVIITICLVLNTVSYVKIYKV 204


>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
          Length = 1167

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
 Frame = -1

Query: 441 NLNYIIHSPTPPFKL*RITVLGTNKQAGGTSPHHFISNVYILLASWLEDSLTPCI--T*K 268
           NLN +     PPF+  R    GT + A    PH   S+V   L   L  S   CI  T K
Sbjct: 395 NLNTLCKLTVPPFQSPRPGWSGTMQNALIDKPHPGKSSVLFFLMIDLNPSDMSCIYSTLK 454

Query: 267 F----SKRKSKCP-SELIQPVRWKTFPFI 196
           F    +KR    P     QP+ WK    I
Sbjct: 455 FVCYRAKRYGFAPVLTFDQPLYWKALTII 483


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,848,858
Number of Sequences: 59808
Number of extensions: 409355
Number of successful extensions: 696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)