Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20113
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40415-9|AAK39249.3|  281|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z74031-1|CAA98460.1|  140|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U40415-9|AAK39249.3|  281|Caenorhabditis elegans Hypothetical
           protein K02G10.1 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 386 LFWAQINRPVVLPHITLFL-TFIYYWLP 306
           LFW  I   + +PH+  ++ T + YW P
Sbjct: 180 LFWCAIGLTIAMPHLFFYMNTEVAYWYP 207


>Z74031-1|CAA98460.1|  140|Caenorhabditis elegans Hypothetical
           protein F32B6.11 protein.
          Length = 140

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
 Frame = -2

Query: 359 VVLPHITLFLTFIYYWLPGW--KIPLHPV-----*HKS---SQKENRSVHP 237
           V LP I+L + +IY W PG+  K P  P+      HKS   SQK  R + P
Sbjct: 51  VSLPAISLSVYYIYIWDPGYITKYPADPINKTVTIHKSPILSQKVERDLLP 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,176,350
Number of Sequences: 27780
Number of extensions: 333781
Number of successful extensions: 701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)