Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20112
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    27   2.2  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   3.8  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    27   3.8  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    26   5.0  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   5.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.7  

>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 90  KIPQIITTYIVQENQNNVLRPHVVDLTVSNLN*YVYGSDIRPEILRYLGSAYY 248
           K   I   +IV  N+N VL P ++ + V      +Y    R EI+R +  A+Y
Sbjct: 518 KSANIEEMFIVDANENQVLEPELMVVDVLRELNKLYIPPHREEIVREIHHAFY 570


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 200 VRYSAGNLEIFGVCILCFFCICYANEKG 283
           V  S+ NLE+   C+ CF   C  + KG
Sbjct: 100 VASSSKNLEVLSACVDCFATFCDNSGKG 127


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 680 PSSTNFKGPIGLRGLTEDFSTNGNSNNQQKPKYQEN-LDKV 561
           P+S N KGPIG+   TE+  T+ N+       ++ N LD V
Sbjct: 176 PTSENRKGPIGIP--TEEILTSQNTQAMLHKLFENNVLDNV 214


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 517 PLPYLIMSILVLFRNTLSRFSWY 585
           P+PY IMS +  F +  SRFS Y
Sbjct: 102 PIPYKIMSSMSNFSDFKSRFSQY 124


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +1

Query: 562 TLSRFSWYFGFCWLLLLPFVEKSSVKPRSPMGPLKLVDDGSSIHMTFLKDWI*SILTNEY 741
           T+    W+    WL L+ FVE   +K ++ +G  K + D   + +  LK ++     N+Y
Sbjct: 270 TIDMGLWFGEQVWLYLVDFVETKRLKKKA-LG--KQLSDDEELAIDRLKIFVEDWKNNKY 326

Query: 742 YNN 750
            +N
Sbjct: 327 SDN 329


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 147  RPHVVDLTVSNLN*YVYGSDIRPEILRYLGSAYYVF 254
            RP+V+   VS+        ++ P +++YLG  Y V+
Sbjct: 2522 RPNVISTLVSSFVKCAAKLELPPHLVKYLGKLYGVY 2557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,161
Number of Sequences: 5004
Number of extensions: 54336
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)