Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20112
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0341 + 3011238-3011246,3011824-3012192,3012412-3012505,301...    29   5.2  
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101...    29   5.2  
03_05_0331 - 23233883-23233972,23234099-23234164,23234300-232343...    28   9.1  

>08_01_0341 +
           3011238-3011246,3011824-3012192,3012412-3012505,
           3012594-3012631,3012862-3013008,3013912-3014011,
           3014615-3015042,3015234-3015389
          Length = 446

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 541 ILVLFRNTLSRFSWY--FGFCWLLLLPFVEKSSVK 639
           ILV     L  F ++  + FCW LLLP+VE   VK
Sbjct: 363 ILVHGSGRLRLFCFFIAYQFCWHLLLPYVEYVKVK 397


>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
            24510294-24510362,24510428-24510502,24510584-24510688,
            24511309-24511407,24511521-24513230,24513489-24513788,
            24514748-24514846,24514962-24515079,24515166-24515251,
            24515334-24515402,24515746-24515843,24516373-24516534,
            24516779-24516787,24516970-24516991,24517620-24517712,
            24517872-24517940,24518720-24518782,24518882-24519037,
            24520895-24521230
          Length = 1355

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 634  RKIFQQMVTVTTNKNRSTKRIWTKYSGRELKLTL 533
            R+  QQ+VT +TN + S   IWTKY  + L   L
Sbjct: 1143 REALQQLVTASTNNDNS---IWTKYFNQILTTIL 1173


>03_05_0331 -
           23233883-23233972,23234099-23234164,23234300-23234365,
           23234451-23234675,23234794-23235279
          Length = 310

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 92  DTPNHYYIHCSGKS 133
           DTP+ YY+HC+G S
Sbjct: 52  DTPSAYYLHCNGGS 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,077,427
Number of Sequences: 37544
Number of extensions: 304993
Number of successful extensions: 757
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)