Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20112
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)              29   3.0  
SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)        29   4.0  
SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)                    29   5.3  
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)                  29   5.3  
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)                   29   5.3  
SB_54136| Best HMM Match : YbgT_YccB (HMM E-Value=3)                   28   7.0  
SB_36569| Best HMM Match : TSP_1 (HMM E-Value=2.9e-05)                 28   9.3  
SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.3  

>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
          Length = 621

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 620 TNGNSNNQQKPKYQENLDKVFRKRTKIDIIKYGNG 516
           +NG SNN  K  Y  N + V   +T  D+  YGNG
Sbjct: 439 SNGVSNNTNKDNYDPNCNYVTYNKT--DVYIYGNG 471


>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
          Length = 1423

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 622 QQMVTVTTNKNRSTKRIWTKYSGREL 545
           Q  +++T N NR  K+IW+K S   L
Sbjct: 685 QVPISITVNNNRDAKKIWSKESNLSL 710


>SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)
          Length = 804

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 9   VRGSVRKKALEKYVIRLITYVNFVY*IKIPQIITTYIVQENQNNVLR 149
           VRG  R  + EK  +RL+  ++  Y I  PQ+  T ++Q  + N++R
Sbjct: 741 VRGVWRNHSHEKRGVRLVAELSLEYKIYDPQLWNTVLLQLLRFNMIR 787


>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
          Length = 310

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +2

Query: 185 LICIRVRYSAGNLEIFGVCILCFFCICYANEKGEINRFRMMIVRRLTFNCSLIVFY 352
           L C+   Y+     ++ + +L F C+ Y   +  +   R++    L +NCS    Y
Sbjct: 8   LFCLN--YNCSRASVYDLRVLFFVCLNYNCSRASVYDLRVLFFVCLNYNCSRASVY 61


>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
          Length = 347

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +2

Query: 185 LICIRVRYSAGNLEIFGVCILCFFCICYANEKGEINRFRMMIVRRLTFNCSLIVFY 352
           L C+   Y+     ++ + +L F C+ Y   +  +   R++    L +NCS    Y
Sbjct: 8   LFCLN--YNCSRASVYDLRVLFFVCLNYNCSRASVYDLRVLFFVCLNYNCSRASVY 61


>SB_54136| Best HMM Match : YbgT_YccB (HMM E-Value=3)
          Length = 157

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 495 FCCLILILGFI*KGVSIAQKTSEFSFSCKSYFTAYMLKSGGNRKKVGA*KTIKLQ 331
           FC L +I+G     +  A  T+  S S + YF     K GG+     A   ++LQ
Sbjct: 2   FCFLWIIVGINIIAIFTALVTASVSASTRPYFNILGAKPGGSTSSRAAATAVELQ 56


>SB_36569| Best HMM Match : TSP_1 (HMM E-Value=2.9e-05)
          Length = 307

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 700 RSCGSNYRHQPISRDPS-GYAV 638
           RSCGS  R+  I+RD S GYAV
Sbjct: 185 RSCGSILRYDAIARDTSTGYAV 206


>SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 69  VNFVY*IKIPQIITTYIVQENQNNVLR--PHVVDLTVSNL 182
           V FV+ I + QI+T  I Q N+N   R  P+ ++  +SNL
Sbjct: 12  VVFVFRI-VSQIVTILIFQRNENRHFRLAPYFINTAISNL 50


>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -1

Query: 745 CNIHWSKYFKSNLSRRSCGSNYRHQPISRD 656
           CN +W+ +   ++ ++    NYR +P+S++
Sbjct: 100 CNKYWTLFHGIDIEKKHPKKNYRREPVSQN 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,412,016
Number of Sequences: 59808
Number of extensions: 376617
Number of successful extensions: 906
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)