Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20112
         (751 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    28   0.27 
AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical prote...    25   3.3  
AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical prote...    25   3.3  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   4.4  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    23   7.6  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   7.6  

>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 28.3 bits (60), Expect = 0.27
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 251 FFCICYANEKGEINRFRMMI 310
           FFC CYA    E+ RF +M+
Sbjct: 81  FFCSCYAPPSWELERFHVML 100


>AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 623 STNGNSNNQQKPKYQENLDKVFRKRTK 543
           + N N+NN+    Y   L K+ +++T+
Sbjct: 145 NNNNNNNNEHHNTYNARLSKLMQEKTR 171


>AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 623 STNGNSNNQQKPKYQENLDKVFRKRTK 543
           + N N+NN+    Y   L K+ +++T+
Sbjct: 145 NNNNNNNNEHHNTYNARLSKLMQEKTR 171


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 254 FCICYANEKGEINRFRMMIVR 316
           FC CYA  + ++ +F  M+ R
Sbjct: 84  FCSCYAPPRWDLEKFEEMLKR 104


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +3

Query: 39  EKYVIRLITYVNFVY*IKIPQIITTYIVQENQNNVLRPHVVDLTVSNLN*YVYGSDIRPE 218
           +KY +    +++ +Y + +  ++   +VQ  ++ +L P  V      L   + G  + P+
Sbjct: 625 QKYQLIAAFFISAIYSLVMMAVLVGIVVQVMEDGILAPSSVFFLAVALQIVITGV-LHPQ 683

Query: 219 ILRYL--GSAYYV 251
            +  L  G  YY+
Sbjct: 684 EMEALPAGLVYYI 696


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 659 GPIGLRGLTEDFSTNGNS 606
           GP+G RGLT      GNS
Sbjct: 51  GPVGPRGLTGHRGEKGNS 68


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,109
Number of Sequences: 2352
Number of extensions: 14376
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)