Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20112
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AL132898-10|CAC14416.2|  346|Caenorhabditis elegans Hypothetical...    30   2.0  
U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap a...    29   4.7  
AL110484-14|CAB54405.1|  127|Caenorhabditis elegans Hypothetical...    29   4.7  
AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A recept...    29   4.7  

>Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical
           protein F21H7.7 protein.
          Length = 351

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 194 IRVRYSAGNLEIFGVCILCFFCICYANEKGEI--NRFRMMIVRRLTFNCSLIVFYAPTFL 367
           I  +Y    LEIFG+C +C +   + +    +  NRFR+   R++ F     VF  P  L
Sbjct: 107 IGFQYQMFMLEIFGICAICSYTYLFESRSSSLPQNRFRIS-RRKIKFLYYFFVF-LPFIL 164

Query: 368 RLPPLLSI 391
            +  LL+I
Sbjct: 165 IVIFLLNI 172


>AL132898-10|CAC14416.2|  346|Caenorhabditis elegans Hypothetical
           protein Y59A8B.21 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 100 WGILI*YTKFTYVINLMTYFSNAFFLTLPLTR 5
           WG L   T F   ++  T  ++ F LT+P+TR
Sbjct: 215 WGYLTDRTSFQIALSTATCLASVFLLTMPMTR 246


>U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 1 protein.
          Length = 123

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 206 IGPVYILVKVTNSKINDMRPEDVVLIFLNNVCSNDLGYLNLIHKIHICY*SDDIFL 39
           +G  Y L++    K   +RPED +  F+NNV    +  +  +++ H     +D+FL
Sbjct: 57  VGQFYFLIR----KRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHH---EEDLFL 105


>AL110484-14|CAB54405.1|  127|Caenorhabditis elegans Hypothetical
           protein Y38E10A.14 protein.
          Length = 127

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 732 GQNTLNPI-FQEGHVDRTTVINQFQGTHR 649
           G +T  PI +++GH  RTTV+   QGT R
Sbjct: 37  GDSTTGPIKYKDGHQKRTTVVWDGQGTIR 65


>AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A
           receptor-associated protein protein.
          Length = 123

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 206 IGPVYILVKVTNSKINDMRPEDVVLIFLNNVCSNDLGYLNLIHKIHICY*SDDIFL 39
           +G  Y L++    K   +RPED +  F+NNV    +  +  +++ H     +D+FL
Sbjct: 57  VGQFYFLIR----KRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHH---EEDLFL 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,575,347
Number of Sequences: 27780
Number of extensions: 301192
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)