Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20110
         (674 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    25   0.43 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    25   0.43 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   0.99 
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   5.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   5.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.3  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   5.3  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 574 CP---WTRR*CARSRSEAGRQAQLYSGLNMGRP 663
           CP   W+    AR+ S+A R+  LYS + +G P
Sbjct: 120 CPRREWSSPPDARAASDAARRGVLYSSVFLGSP 152


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 574 CP---WTRR*CARSRSEAGRQAQLYSGLNMGRP 663
           CP   W+    AR+ S+A R+  LYS + +G P
Sbjct: 276 CPRREWSSPPDARAASDAARRGVLYSSVFLGSP 308


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
 Frame = +1

Query: 382 NDRGVSFTFGTEVVGKFLSKHEFDLICRAHQVVEDGYEFFAKSNSSHSSRHQTTAGSL-I 558
           N     F    + +GK  +K ++ ++   HQ VE   EF+  S      R    A SL +
Sbjct: 137 NPEPADFADAPDAIGKTRTKDKYRVVYTDHQRVELEKEFY-YSRYITIRRKAELANSLGL 195

Query: 559 MQAP*CPWTRR*CARSRSEAGRQ---AQLYSGLNMGRPTRR 672
            +     W +   A+ R +  ++    Q  S +NMG  T++
Sbjct: 196 SERQVKIWFQNRRAKERKQVKKREEVTQKDSPMNMGHLTQQ 236


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 229 LVNYRRNGKTVEAVCERL 176
           LV+Y +  KT+ A C R+
Sbjct: 174 LVDYMKKNKTLGAACGRI 191


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 229 LVNYRRNGKTVEAVCERL 176
           LV+Y +  KT+ A C R+
Sbjct: 488 LVDYMKKNKTLGAACGRI 505


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 229 LVNYRRNGKTVEAVCERL 176
           LV+Y +  KT+ A C R+
Sbjct: 721 LVDYMKKNKTLGAACGRI 738


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 229 LVNYRRNGKTVEAVCERL 176
           LV+Y +  KT+ A C R+
Sbjct: 721 LVDYMKKNKTLGAACGRI 738


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 107 CASINRIYGF 136
           C S+NRI+GF
Sbjct: 527 CDSVNRIFGF 536


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,667
Number of Sequences: 336
Number of extensions: 3531
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)