Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20109
         (593 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   2.6  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   2.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.4  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   3.4  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   3.4  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   7.8  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 511 LCFCFFFMVLTVTFLPAFQ 455
           LCFCF+++++ V      Q
Sbjct: 324 LCFCFYWLLVMVAMFSRTQ 342


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 511 LCFCFFFMVLTVTFLPAFQ 455
           LCFCF+++++ V      Q
Sbjct: 280 LCFCFYWLLVMVAMFSRTQ 298


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 520  PTGLCFCFFF-MVLTVTFL 467
            P GL F FFF ++L + F+
Sbjct: 1325 PIGLVFVFFFALILVIQFV 1343


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 520  PTGLCFCFFF-MVLTVTFL 467
            P GL F FFF ++L + F+
Sbjct: 1325 PIGLVFVFFFALILVIQFV 1343


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 520  PTGLCFCFFF-MVLTVTFL 467
            P GL F FFF ++L + F+
Sbjct: 1325 PIGLVFVFFFALILVIQFV 1343


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 520  PTGLCFCFFF-MVLTVTFL 467
            P GL F FFF ++L + F+
Sbjct: 1325 PIGLVFVFFFALILVIQFV 1343


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 476 YVFTSIPVYFTSLARINFRTFKF*WTLFIGLAL 378
           Y  T  P+ F +L  I +      W + IG+ L
Sbjct: 162 YQVTGTPIIFHNLTLITYSLCVISWAVGIGIML 194



 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 158 WIPM*RVSQTFGTTYSGM 211
           W+ +  + Q  G  YSGM
Sbjct: 263 WVDLSHMMQQLGKAYSGM 280


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 476 YVFTSIPVYFTSLARINFRTFKF*WTLFIGLAL 378
           Y  T  P+ F +L  I +      W + IG+ L
Sbjct: 162 YQVTGTPIIFHNLTLITYSLCVISWAVGIGIML 194



 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 158 WIPM*RVSQTFGTTYSGM 211
           W+ +  + Q  G  YSGM
Sbjct: 263 WVDLSHMMQQLGKAYSGM 280


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 91  AVQNAAITEGEEKKDDK 141
           AVQ +++TEG+  K  K
Sbjct: 65  AVQGSSLTEGKRSKRSK 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,115
Number of Sequences: 336
Number of extensions: 2776
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)