Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20109
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    43   3e-05
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    42   9e-05
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    27   1.6  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   3.6  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   4.8  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.3  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   6.3  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   8.3  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   8.3  

>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +3

Query: 255 LKCLQDIK-VQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIY 431
           L+ L DI+   +  D   + LEF F  N+YFTN +LTK Y  K   D+ SP    G  +Y
Sbjct: 192 LRSLSDIRFTNLSGDVHGYKLEFEFDSNDYFTNKILTKTYYYK---DDLSP---SGEFLY 245

Query: 432 S-CKGCEINW 458
              +G +INW
Sbjct: 246 DHAEGDKINW 255



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 163 PNVKGIPDFWYNIFRNVSMLSEMMQEHDEPI 255
           P+ KGIP+FW     NV ++ EM+   DE +
Sbjct: 161 PDPKGIPEFWLTCLHNVFLVGEMITPEDENV 191



 Score = 28.3 bits (60), Expect = 0.89
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 509 KSRGSVRTVTKSVQAXSFFNFFNPPTL 589
           +     R V  +V   SFFNFF+PP L
Sbjct: 274 RKTNQTRLVRTTVPNDSFFNFFSPPQL 300


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 25/75 (33%), Positives = 34/75 (45%)
 Frame = +3

Query: 147 RASNGSQCKGYPRLLVQHIQECLNAQRNDART**TNLKCLQDIKVQMHEDPISFTLEFYF 326
           +   G   KG P   +  ++  L+            L  L DI++   E P  F LEF F
Sbjct: 154 KQEGGDDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEF 212

Query: 327 APNEYFTNTVLTKEY 371
           A N +FTN +LTK Y
Sbjct: 213 AENPFFTNKILTKTY 227



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = +1

Query: 61  DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 240
           D+  EEE+ +  + A   E +E    ++ +     + KGIP+FW    +NV  LSEM+  
Sbjct: 126 DEPTEEEIKKG-EAADENEKKEPTSSESKKQEGGDDTKGIPEFWLTAMKNVLSLSEMITP 184

Query: 241 HDE 249
            DE
Sbjct: 185 EDE 187



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +2

Query: 509 KSRGSVRTVTKSVQAXSFFNFFNPPTLP 592
           K+    R V  SV   SFFNFFNPPT P
Sbjct: 269 KNTKQTRVVKVSVPRDSFFNFFNPPTPP 296


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 503 EAKSRGSVRTVTKSVQAXSFFNFFNPPTL 589
           E  S  ++R++TK VQ  SF+ F   P L
Sbjct: 39  EDASEEAIRSITKIVQDLSFYEFSGSPAL 67


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 97  QNAAITEGEEKKDDKAIEPPMDPNVKGIP 183
           +N+ + E EEK D +AIE   + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = -3

Query: 171 YIGIH-WRLDSLVILLFLTLSDGSI---LYRPS*LFFFSVITPWVETFIIIRFIC 19
           Y G+  + + ++ ILLF ++  G++   L++P  +   SV T W+ + I + F+C
Sbjct: 659 YTGLDSYNIFAVGILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 73  EEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 180
           EEEL+ ++ N    + E++KD+   +P   P++  +
Sbjct: 475 EEELSDSLSNDFGIDAEKEKDENLSKPEHHPSITSV 510


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 144 YRASNGSQCKGYPRLLVQHIQEC 212
           YR SNG   + Y  L V+ IQ C
Sbjct: 489 YRLSNGKSIQYYSTLFVRLIQSC 511


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 384  KPDEES-PLEFEGPEIYSCKGCEINWNAGXXXXXXXXXXXXXXSPVGQFA 530
            +PDE   PL F G  + S +GCE+  ++G               P+G  A
Sbjct: 1044 EPDENILPLHFYGELVKSPQGCEVLESSGHFESFMGTLVEFYDKPLGNEA 1093


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -3

Query: 168 IGIHWRLDSLVILLFLTLSDGSILYRPS*LFFFSVITPWVETFIIIRFICAIHLV 4
           IG+H   D +++LLF    D    Y  +  F+ S   PW+   +I+    + H++
Sbjct: 62  IGVHHLYDGVLVLLF----DALFTYFVA-AFYRSSRMPWIIFIVILGHTFSSHVI 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,852
Number of Sequences: 5004
Number of extensions: 45549
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)