Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20109
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 48 6e-06
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 48 7e-06
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 47 1e-05
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 47 1e-05
05_03_0077 + 8200529-8200541,8200658-8200701,8200793-8200888,820... 35 0.043
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 33 0.23
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 31 0.92
07_03_0546 - 19325526-19326054,19327109-19327631,19327898-193281... 29 3.7
01_01_0165 - 1410137-1410924,1411774-1411933 28 4.9
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 28 6.5
09_06_0262 - 21921647-21922796,21922897-21923423 27 8.5
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 48.0 bits (109), Expect = 6e-06
Identities = 29/71 (40%), Positives = 38/71 (53%)
Frame = +3
Query: 255 LKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS 434
LK L+DIK +DP F L+F+F N +F N+VLTK Y M DE+ P+ +
Sbjct: 160 LKYLKDIKWARIDDPKGFKLDFFFDTNPFFKNSVLTKTYHM---VDEDEPI------LEK 210
Query: 435 CKGCEINWNAG 467
G EI W G
Sbjct: 211 AIGTEIEWYPG 221
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +1
Query: 121 EEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPI*NACKILK 279
+E + A E D + KG+PDFW + +LSE +QE DEP A K LK
Sbjct: 116 DEPASENAAEGK-DADAKGVPDFWLTAMKTNEVLSEEIQERDEP---ALKYLK 164
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 509 KSRGSVRTVTKSVQAXSFFNFFNPPTLP 592
K + + +TK+ SFFNFF+PP +P
Sbjct: 235 KGSKNAKPITKTEVCESFFNFFSPPQVP 262
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 47.6 bits (108), Expect = 7e-06
Identities = 30/71 (42%), Positives = 37/71 (52%)
Frame = +3
Query: 255 LKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS 434
LK L+DIK +P F LEFYF N +F N+VLTK Y M DE+ P+ +
Sbjct: 157 LKYLKDIKWYRISEPKGFKLEFYFDTNPFFKNSVLTKTYHM---IDEDEPI------LEK 207
Query: 435 CKGCEINWNAG 467
G EI W G
Sbjct: 208 AIGTEIEWFPG 218
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +1
Query: 151 PPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPI*NACKILK 279
P KG+P+FW N +N +LSE +QE DE A K LK
Sbjct: 122 PAEQKEEKGVPEFWLNAMKNHEILSEEIQERDE---EALKYLK 161
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 464 W*KRNCQDHKEETEAKSRGSVRT--VTKSVQAXSFFNFFNPPTLP 592
W C K + +GS T +TK+ SFFNFF+PP +P
Sbjct: 215 WFPGKCLTQKVLKKKPKKGSKNTKPITKTENCESFFNFFSPPQVP 259
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/71 (40%), Positives = 36/71 (50%)
Frame = +3
Query: 255 LKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS 434
LK L+DIK +DP F EF+F N +F N VLTK Y M + DE P +
Sbjct: 236 LKYLKDIKWCRIDDPKGFKFEFFFYTNPFFKNQVLTKTYHMIDEDDE--------PILEK 287
Query: 435 CKGCEINWNAG 467
G EI W+ G
Sbjct: 288 AIGTEIEWHPG 298
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 154 PMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPI*NACKILK 279
P+ KG+PDFW N +N +L+E + E DE A K LK
Sbjct: 202 PLYSKEKGVPDFWLNAMKNNEILAEEIHESDE---EALKYLK 240
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 491 KEETEAKSRGSVRTVTKSVQAXSFFNFFNPPTLP 592
+E +S S + +TK+ + SFFNFF+PP +P
Sbjct: 303 QEVLTKESSESTKPITKTEECESFFNFFSPPQVP 336
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/71 (40%), Positives = 36/71 (50%)
Frame = +3
Query: 255 LKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS 434
LK L+DIK +DP F EF+F N +F N VLTK Y M + DE P +
Sbjct: 131 LKYLKDIKWCRIDDPKGFKFEFFFDTNPFFKNQVLTKTYHMIDEDDE--------PILEK 182
Query: 435 CKGCEINWNAG 467
G EI W+ G
Sbjct: 183 AIGTEIEWHPG 193
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 464 W*KRNCQDHKEETEAKSRGSVRTVTKSVQAXSFFNFFNPPTLP 592
W NC + T+ S S + +TK+ + SFFNFF+PP +P
Sbjct: 190 WHPGNCLTQEVLTKESSE-STKPITKTEEYESFFNFFSPPQVP 231
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 172 KGIPDFWYNIFRNVSMLSEMMQEHDEPI*NACKILK 279
KG+PDFW +N +L+E + E DE A K LK
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDE---EALKYLK 135
>05_03_0077 +
8200529-8200541,8200658-8200701,8200793-8200888,
8201585-8201639,8201753-8201817,8202309-8202434,
8202742-8202903
Length = 186
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 491 KEETEAKSRGSVRTVTKSVQAXSFFNFFNPPTLP 592
+E +S S + +TK+ + SFFNFF+PP +P
Sbjct: 90 EEVLTKESSESTKPITKTEECESFFNFFSPPQVP 123
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 172 KGIPDFWYNIFRNVSMLSE 228
KG+PDFW N + +L+E
Sbjct: 72 KGVPDFWLNAMKKNEILAE 90
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 169 VKGIPDFWYNIFRNVSMLSEMMQEHDEPI 255
+K IPDFW F + ML E++ E D+ I
Sbjct: 72 IKQIPDFWLTAFLSHPMLGELLTEDDQKI 100
Score = 31.1 bits (67), Expect = 0.69
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 258 KCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNTVLTKEY 371
K L+ I V ED S +++ F+PN YF +T LTK Y
Sbjct: 102 KHLESIDVDDSEDIKSGYSITLTFSPNPYFEDTKLTKTY 140
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 30.7 bits (66), Expect = 0.92
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 169 VKGIPDFWYNIFRNVSMLSEMMQEHDE 249
++ IPDFW F + +LSE++ E D+
Sbjct: 77 IQTIPDFWLTAFLSHPLLSELLTEEDQ 103
>07_03_0546 -
19325526-19326054,19327109-19327631,19327898-19328152,
19328283-19328472,19328473-19328525,19329295-19329555,
19329670-19329720,19329873-19330121,19330225-19330453,
19332245-19332559
Length = 884
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = -3
Query: 177 TLYIGIHWRLDSLVILLFLTLSDGSILYRPS*LFFFSVITPWVE-TFIIIRFICAIHLV 4
T+ + + W+++ +V+L FLTLS G L +FF SV+ + +++++ F ++L+
Sbjct: 550 TIIMLLIWQINIIVVLCFLTLSLGLEL-----IFFSSVLGSVADGSWVLLVFAAVLYLI 603
>01_01_0165 - 1410137-1410924,1411774-1411933
Length = 315
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 1 RHEVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDK 141
R+++ G P D+E W+++ +EE+ + + E EE+ D K
Sbjct: 64 RYDLFGKRRPGDEEFRKAWQENVDEED---CLWTGSEDEDEEENDTK 107
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +1
Query: 10 VNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDF 189
VN + +DE + ++D E E+ Q + E+K DDK ++ +D V+ I F
Sbjct: 1951 VNLDQQQKEDEEIEKQKEDEEIEK-----QKEELQTDEQKHDDKRVDFIIDTQVESIDAF 2005
Query: 190 WYNIFRNV--SMLSEMMQEHD 246
+V ML++ + +H+
Sbjct: 2006 QAEQTDSVVTEMLNDEVTQHE 2026
>09_06_0262 - 21921647-21922796,21922897-21923423
Length = 558
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 43 CLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPM 159
CL+PW D E V +AA GE D + E M
Sbjct: 300 CLSPWSDHRSSEYYNCNVYDAAKANGEASDDKRRREQGM 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,503,971
Number of Sequences: 37544
Number of extensions: 278048
Number of successful extensions: 790
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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