Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20109
(593 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 53 1e-07
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 52 2e-07
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 48 5e-06
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil... 38 0.007
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil... 31 0.77
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 30 1.0
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 30 1.0
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea... 30 1.3
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 29 2.3
At4g27870.1 68417.m04001 integral membrane family protein contai... 28 4.1
At2g27810.2 68415.m03372 xanthine/uracil permease family protein... 28 4.1
At2g27810.1 68415.m03371 xanthine/uracil permease family protein... 28 4.1
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 53.2 bits (122), Expect = 1e-07
Identities = 33/71 (46%), Positives = 39/71 (54%)
Frame = +3
Query: 255 LKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS 434
LK L+DIK E+P F LEF+F N YF NTVLTK Y M DE+ PL +
Sbjct: 153 LKYLKDIKWCKIEEPKGFKLEFFFDTNPYFKNTVLTKSYHM---IDEDEPL------LEK 203
Query: 435 CKGCEINWNAG 467
G EI+W G
Sbjct: 204 AMGTEIDWYPG 214
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 464 W*KRNCQDHKEETEAKSRGSVRT--VTKSVQAXSFFNFFNPPTLP 592
W C K + +GS T +TK SFFNFF+PP +P
Sbjct: 211 WYPGKCLTQKILKKKPKKGSKNTKPITKLEDCESFFNFFSPPEVP 255
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 79 ELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPI* 258
E+ + ++ K D+ E + KG+P FW +N ++SE + E DE
Sbjct: 96 EIVNGTTEVELAPEDDTKVDQGEEKTAEE--KGVPSFWLTALKNNDVISEEVTERDEGAL 153
Query: 259 NACKILK-CK 285
K +K CK
Sbjct: 154 KYLKDIKWCK 163
>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 379
Score = 52.4 bits (120), Expect = 2e-07
Identities = 32/71 (45%), Positives = 38/71 (53%)
Frame = +3
Query: 255 LKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYS 434
LK L+DIK E+P F LEF+F N YF NTVLTK Y M DE+ P+ +
Sbjct: 152 LKYLKDIKWSRVEEPKGFKLEFFFDQNPYFKNTVLTKTYHM---IDEDEPI------LEK 202
Query: 435 CKGCEINWNAG 467
G EI W G
Sbjct: 203 ALGTEIEWYPG 213
Score = 34.7 bits (76), Expect = 0.047
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 464 W*KRNCQDHKEETEAKSRGSVRT--VTKSVQAXSFFNFFNPPTLP 592
W C K + +GS T +TK+ SFFNFF+PP +P
Sbjct: 210 WYPGKCLTQKILKKKPKKGSKNTKPITKTEDCESFFNFFSPPQVP 254
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +1
Query: 94 VQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPI*NACKI 273
V+ AA E+ +DK+ E KG+PDFW +N + +E + E DE K
Sbjct: 104 VEGAAEEVKSEQGEDKSAEE------KGVPDFWLIALKNNEITAEEITERDEGALKYLKD 157
Query: 274 LKCKCMKTP 300
+K ++ P
Sbjct: 158 IKWSRVEEP 166
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 48.0 bits (109), Expect = 5e-06
Identities = 30/68 (44%), Positives = 37/68 (54%)
Frame = +3
Query: 264 LQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKG 443
L+DIK E+P F LEF+F N YF NT+LTK Y M DE+ PL + G
Sbjct: 155 LKDIKWCKIEEPKGFKLEFFFDQNPYFKNTLLTKAYHM---IDEDEPL------LEKAIG 205
Query: 444 CEINWNAG 467
EI+W G
Sbjct: 206 TEIDWYPG 213
Score = 35.1 bits (77), Expect = 0.036
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 464 W*KRNCQDHK--EETEAKSRGSVRTVTKSVQAXSFFNFFNPPTLP 592
W C K ++ K + + +TK+ SFFNFFNPP +P
Sbjct: 210 WYPGKCLTQKILKKKPKKGAKNAKPITKTEDCESFFNFFNPPQVP 254
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 94 VQNAAITEG--EEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDE 249
V A EG E+ K D+ E + KG+P FW +N ++SE + E DE
Sbjct: 98 VNGATEVEGAPEDAKMDQGDEKTAEE--KGVPSFWLTALKNNDVISEEITERDE 149
>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
protein similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 329
Score = 37.5 bits (83), Expect = 0.007
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 255 LKCLQDIKVQMHEDPI-SFTLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIY 431
LK L+DI+ ED +F LEF F N YF N+VL+K Y + DE +GP +
Sbjct: 154 LKYLKDIRSCRVEDTSRNFKLEFLFDSNLYFKNSVLSKTYHVN---DE------DGPVLE 204
Query: 432 SCKGCEINWNAG 467
G +I W G
Sbjct: 205 KVIGTDIEWFPG 216
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +2
Query: 464 W*KRNCQDHKEETEAKSRGSVRTV-----TKSVQAXSFFNFFNPPTLP 592
W C HK + K++ + V TK+ SFFNFF PP +P
Sbjct: 213 WFPGKCLTHKVVVKKKTKKGPKKVNNIPMTKTENCESFFNFFKPPEIP 260
>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105|SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
PF00956: Nucleosome assembly protein (NAP)
Length = 256
Score = 30.7 bits (66), Expect = 0.77
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 169 VKGIPDFWYNIFRNVSMLSEMMQEHDEPI 255
+K IPDFW F + L E++ E D+ I
Sbjct: 70 IKTIPDFWLTAFLSHPALGELLTEEDQKI 98
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 61 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 180
DD +EEE + + +I E EEK D +E P D N+K +
Sbjct: 43 DDDDEEEAVSELNSLSIKE-EEKPDS-ILEEPEDSNIKAV 80
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 30.3 bits (65), Expect = 1.0
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +1
Query: 7 EVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPD 186
E NG E NDDE N + +EE +N+ G E ++ + M+ N G+ +
Sbjct: 195 EENGNDEENDDE--NTEENGNDEENEKEDEENSMEENGNESEESGNEDHSMEENGSGVGE 252
Query: 187 FWYNIFRNVSMLSEMMQEHDE 249
N +VS E ++ +E
Sbjct: 253 DNENEDGSVSGSGEEVESDEE 273
>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P24733 myosin heavy chain,
striated muscle [Aequipecten irradians]
Length = 342
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 22 YEPND-DECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNV 171
+E N+ +E ++ +R + E+L + VQN A+ +EKK+D P D NV
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKEDIDGPGPGDNNV 247
>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +1
Query: 61 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 240
D T+E EL AV+NA++ GE+ + IE K IP Y I+ + + +
Sbjct: 442 DKTDEAELQSAVENASLLLGEQ--GTRVIEYTSYAETKTIPGH-YVIYWELLVKDQTNPP 498
Query: 241 HDEPI*NAC 267
+DE + C
Sbjct: 499 NDEVMARCC 507
>At4g27870.1 68417.m04001 integral membrane family protein contains
Pfam PF01988: Integral membrane protein
Length = 761
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +1
Query: 4 HEVNGTYEPNDDEC-LNPWRDDTEEE-ELARAVQNAAITEGEEKKDDKAIEPPMDPNVKG 177
HE + T + N ++ L P T E+ E +R ++ + +G+ KD A++P ++
Sbjct: 131 HEESQTADLNGEQTQLEPENGSTSEDNERSREIEE--VLDGDVSKDLDAVDPLAGEVIEE 188
Query: 178 IPDFWYNIFRNVSMLSEMMQEHD 246
DF + +V + + + HD
Sbjct: 189 EVDFEDVEYHDVENMMDKQETHD 211
>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 660
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 100 NAAITEGEEKKDDKAIEPPMDPNVKGIP 183
+AA+T GE KD K PP P +P
Sbjct: 82 SAAVTNGETDKDKKEKPPPPPPGSVAVP 109
>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 709
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 100 NAAITEGEEKKDDKAIEPPMDPNVKGIP 183
+AA+T GE KD K PP P +P
Sbjct: 82 SAAVTNGETDKDKKEKPPPPPPGSVAVP 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,923,307
Number of Sequences: 28952
Number of extensions: 236638
Number of successful extensions: 745
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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