Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20107
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    28   1.3  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    27   2.3  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    26   5.4  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   5.4  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   7.1  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    25   9.4  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 369  SNVK-HTDGAIQNDENDLHNQEAPQSQKVGGIFAF 470
            S++K  T   ++N+EN+L ++  P    VG +F F
Sbjct: 1637 SSIKLSTKEGLENEENELKDKAPPNEPNVGSLFLF 1671


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +3

Query: 279  STTPSMKQTQNSLPSYLSNLAPGFAMDPT--QSNVKHTDGAIQNDENDL 419
            ++TP    T++S P    +  PGF  D T  QSN    D      E DL
Sbjct: 1216 TSTPQAMLTKDSTPLSSDSATPGFERDSTEEQSNTNDMDEDRSELEEDL 1264


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 258 RDAYSKCSTTPSMKQTQNSLPSYLSNLAPGFAMDPTQSNVKHTDGAIQNDENDLHNQE 431
           R  YSK ++ P      ++  S   +  PGFA   +++   H +    N  +D H +E
Sbjct: 675 RPEYSKTASRPQFSDISSTASSNSLSNKPGFAHSESRNYHTHDE---DNSSDDNHKRE 729


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 438 QSQKVGGIFAFRPQGVPFPQPGMSHS*CRPGRSSARITR 554
           Q Q +   F F+P   P  QPG  H   +  ++S   TR
Sbjct: 209 QQQPLSSAFPFQPVKQPTEQPGSLHPFMQESKTSPFATR 247


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 246 HKGLRDAYSKCSTTPSMKQTQNS 314
           HK  +  +SK STTPS  Q ++S
Sbjct: 13  HKPTKPNFSKTSTTPSTSQLKHS 35


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = +1

Query: 331 VTWRLASLWIRRSPTSSTQMALYKMMKTIYTIKK 432
           + W     W R    S+  ++ Y  M T++++K+
Sbjct: 211 IMWMAEDYWRRHKVRSNIDVSFYTGMPTLFSVKR 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,289
Number of Sequences: 5004
Number of extensions: 49501
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)