Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20107
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    29   4.3  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   4.3  
03_02_0974 - 12833836-12834246                                         29   4.3  
01_01_1090 - 8576498-8576893                                           29   5.6  
06_01_0176 + 1377184-1377444,1377778-1378368                           28   7.4  
01_07_0077 - 40916077-40916412                                         28   7.4  
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946...    28   9.8  

>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
            10791796-10791903,10793133-10797686,10798347-10798461,
            10799597-10799724,10799843-10800043,10800158-10800227,
            10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 312  SLPSYLSNLAPGFAMDPTQSNVKHTDGAIQNDENDLHNQEAPQSQKVG-GIFAFRPQG 482
            S+   L +  PG A   T  N    D  +Q DE+ + +  A  +   G  +  F  QG
Sbjct: 1695 SIGQILGDAKPGSASSKTTKNTPEVDSGLQQDEDRIQSTNASSTLAAGEDVRRFSEQG 1752


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +3

Query: 327  LSNLAPGFAMDPTQSNVKHTDGAIQNDENDLHNQEAPQSQKVGGIFAFRPQGVPFPQ 497
            ++N  PG +++ TQ+ V  T  ++  D  + +    PQ     G F FRP GVPF Q
Sbjct: 1268 MTNFIPGGSVN-TQAAVNFTP-SVPPDYGNNNLYIKPQGSN--GNFQFRPTGVPFQQ 1320


>03_02_0974 - 12833836-12834246
          Length = 136

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 465 AFRPQGVPFPQPGMSHS*CRPGRSSARITRPCSS 566
           A     VP   PG S+  CRPG  +   TR CS+
Sbjct: 97  ALMRNSVPCSIPGASYYNCRPGADANPYTRGCSA 130


>01_01_1090 - 8576498-8576893
          Length = 131

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 456 GIFAFRPQGVPFPQPGMSHS*CRPGRSSARITRPCSS 566
           G  A R   VP  Q G S+  C+PG  +   +R CS+
Sbjct: 89  GYDALRRDSVPCSQRGASYYNCQPGAEANPYSRGCSA 125


>06_01_0176 + 1377184-1377444,1377778-1378368
          Length = 283

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 415 IYTIKKLRNHRKSAGYSLFDLKG 483
           ++ + K ++H+KSAGYS  +L G
Sbjct: 219 VWKLLKEKDHKKSAGYSFIELDG 241


>01_07_0077 - 40916077-40916412
          Length = 111

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 465 AFRPQGVPFPQPGMSHS*CRPGRSSARITRPCSS 566
           A R   VP    G S+  CRPG  +   TR CS+
Sbjct: 72  AMRRNAVPCSYRGASYYNCRPGGQANPYTRGCSA 105


>01_01_1190 +
           9463973-9465732,9466210-9466440,9467664-9467793,
           9468723-9468888,9469528-9469859,9470284-9470513,
           9471535-9471613,9471689-9471865
          Length = 1034

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 393 AIQNDENDLHNQEAPQSQKVGGI--FAFRPQGVPFPQPGMSHS 515
           A   D + LH+Q  P  +K+GG+   A   +  P    G++HS
Sbjct: 496 AASTDHSKLHSQRRPSKKKIGGMSNHANSVESHPSSAIGLAHS 538


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,379,925
Number of Sequences: 37544
Number of extensions: 381444
Number of successful extensions: 1268
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)