Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20107
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei...    28   6.7  
AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical ...    28   6.7  

>AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical
           protein Y43C5A.4 protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 378 KHTDGAIQNDENDLHNQEAPQSQKVGGIFAFRPQGVPFPQPGM 506
           K  DG+ +  +    +Q+AP S K    FA  P G P P P +
Sbjct: 117 KKPDGSEKKTQTQTEDQKAPDSPKKDDFFA--PPGAPDPVPAV 157


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 482 GSIPPARNVPFMMPAGPQFRPYNPAM 559
           GS PP   VP   P+GP   P  P M
Sbjct: 240 GSFPPGPQVPGSYPSGPADIPQGPGM 265


>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical
           protein F22E10.3 protein.
          Length = 1327

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 337 WRLASLWIRRSPTSSTQMALYKMMKTIYTIKKLRNHRKSAGYSLFDLKG 483
           WRLAS+ +  +PT    M+L     T  TIK+L    K+   +   L G
Sbjct: 248 WRLASMMLGVAPTCCICMSLLARQMTSTTIKELIGVGKAGSIAEESLMG 296


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/81 (25%), Positives = 36/81 (44%)
 Frame = +3

Query: 234  TETDHKGLRDAYSKCSTTPSMKQTQNSLPSYLSNLAPGFAMDPTQSNVKHTDGAIQNDEN 413
            T  D +GL     +  T P++K T+N+   YLS     F +D  ++ ++H     +N  N
Sbjct: 1618 TSGDRRGLNRLPQESYTEPAVKNTKNN-SEYLS--PHRFNLDEQKAVIRHEKETAKNAIN 1674

Query: 414  DLHNQEAPQSQKVGGIFAFRP 476
             L ++       V  +   RP
Sbjct: 1675 MLSDRLRKLPPPVDNVRLIRP 1695


>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
           related (146.8 kD)(pgp-14) protein.
          Length = 1327

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 337 WRLASLWIRRSPTSSTQMALYKMMKTIYTIKKLRNHRKSAGYSLFDLKG 483
           WRLAS+ +  +PT    M+L     T  TIK+L    K+   +   L G
Sbjct: 248 WRLASMMLGVAPTCCICMSLLARQMTSTTIKELIGVGKAGSIAEESLMG 296


>AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical
           protein F09D1.1 protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 571 RQLEHGRVIRAELRPGRHHEW-DIPGW 494
           R+LE  R+I  EL+ G+H E  D P W
Sbjct: 96  RELERQRIIEEELKSGKHDEHDDDPVW 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,700,847
Number of Sequences: 27780
Number of extensions: 301134
Number of successful extensions: 924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)