Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20107
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   4.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.3  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   4.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   4.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   10.0 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   10.0 

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 237 ETDHKGLRDAYSKCSTTPSMK 299
           E +++ +RDAY  C T  +M+
Sbjct: 42  EVEYEVVRDAYDNCITVCNME 62


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 376  TLDCVGSIAKPGAKLLR 326
            TLD VGS+ K G   LR
Sbjct: 1229 TLDGVGSVEKTGVSTLR 1245


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 467 FSTSRGSIPPARNVPFMMPAG 529
           + T+RG +P  +  PF++  G
Sbjct: 197 YDTARGMLPDPKKTPFLISWG 217


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 467 FSTSRGSIPPARNVPFMMPAG 529
           + T+RG +P  +  PF++  G
Sbjct: 197 YDTARGMLPDPKKTPFLISWG 217


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 409 KTIYTIKKLRNHRKSAGYSLFDLKGFHSPSP 501
           KTI+     +N+ K   Y++ +++    P P
Sbjct: 321 KTIHNNNNYKNYNKKLYYNIINIEQIPVPVP 351


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 739 AGHVVIHGARRVESQSSS 686
           +GH V+H A+ V + S+S
Sbjct: 937 SGHSVLHSAQSVVASSAS 954


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,245
Number of Sequences: 438
Number of extensions: 3158
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)