Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20106
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 95 1e-20
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 54 2e-08
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 54 2e-08
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 48 1e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 45 1e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 2e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 44 2e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 43 4e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 42 9e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 41 2e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.001
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 38 0.001
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 36 0.004
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.006
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.054
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 32 0.071
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 32 0.071
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 30 0.29
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.38
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 29 0.50
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.50
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.2
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 28 1.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.0
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 27 2.0
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.5
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 27 3.5
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 26 4.7
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 4.7
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 4.7
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 26 6.1
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 26 6.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.1
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 8.1
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 25 8.1
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 94.7 bits (225), Expect = 1e-20
Identities = 45/63 (71%), Positives = 54/63 (85%), Gaps = 1/63 (1%)
Frame = +3
Query: 261 FGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
FGTITSAK+M E G+SKGFGFVC+++PEEA KAVTEMN R++ KPLYVALAQRKE R+
Sbjct: 387 FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRR 446
Query: 438 AHL 446
+ L
Sbjct: 447 SQL 449
Score = 93.1 bits (221), Expect = 4e-20
Identities = 41/75 (54%), Positives = 60/75 (80%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQ 189
GFV + + + A++A ELN KE +GK LYVGRAQKK ER++EL++++EQ+K E++ +YQ
Sbjct: 304 GFVNYANHECAQKAVDELNDKEY-KGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQ 362
Query: 190 GVNLYVKNLDDTIDD 234
GVNL++KNL D +DD
Sbjct: 363 GVNLFIKNLQDEVDD 377
Score = 48.8 bits (111), Expect = 8e-07
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +3
Query: 261 FGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
FG ITS ++ + + +GFGFV +++ E A KAV E+N + K LYV AQ+K +R+
Sbjct: 284 FGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHERE 343
Query: 438 AHL 446
L
Sbjct: 344 EEL 346
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 261 FGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
FG I S KV +++ G +KG+GFV F S E A A+ +NG ++ K +YV + +R+
Sbjct: 191 FGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQ 250
Query: 438 A 440
+
Sbjct: 251 S 251
Score = 44.4 bits (100), Expect = 2e-05
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 177
GFV + P+ A +A E+N + ++ GKPLYV AQ+K R+ +L+ + + RL
Sbjct: 407 GFVCYTTPEEANKAVTEMN-QRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRL 461
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/75 (36%), Positives = 38/75 (50%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQ 189
GFV F+ ++A A +NG L+ K +YVG + ERQ K E LK+
Sbjct: 211 GFVHFDSVESANAAIEHVNGM-LLNDKKVYVGHHVSRRERQS----KVEALKA------N 259
Query: 190 GVNLYVKNLDDTIDD 234
N+Y+KNLD I +
Sbjct: 260 FTNVYIKNLDTEITE 274
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 54.4 bits (125), Expect = 2e-08
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Frame = +3
Query: 255 APFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
+PFG+I S+ + G SKG+GFV F E A +A +NG +VG K ++V A+RK
Sbjct: 405 SPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKS 464
Query: 429 DR 434
DR
Sbjct: 465 DR 466
Score = 35.9 bits (79), Expect = 0.006
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKSERLTRY 186
GFVAF +AA RA LNG +V K ++V A++K++R + L+ F + SE+ +
Sbjct: 428 GFVAFRQIEAAVRAKDTLNGM-MVGKKRIFVCFAERKSDRIRRLQAFFANKPTSEQTAQQ 486
Query: 187 QGVNLYVK 210
L+VK
Sbjct: 487 DNKALFVK 494
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 196 NLYVKNLDDTI 228
NLYVKNLDDT+
Sbjct: 383 NLYVKNLDDTV 393
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/48 (50%), Positives = 34/48 (70%)
Frame = +3
Query: 306 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLT 449
SKG+GFV FS P EA +A+ +NG + G K L+V A+++EDRK L+
Sbjct: 461 SKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRKKRLS 508
Score = 35.1 bits (77), Expect = 0.010
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 159
GFV+F P A +A LNG L K L+V A+K+ +R+K L F Q
Sbjct: 465 GFVSFSHPFEAVQAINTLNG-VLFGKKRLFVNYAEKREDRKKRLSAIFSQ 513
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = +3
Query: 243 AQRIAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 422
A R P I K+ E R +GFGFV F++ E+ ++A+ EMNG+ VG L V A
Sbjct: 236 AVRSLPPYIIRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVF 295
Query: 423 KEDRK 437
+ED++
Sbjct: 296 REDKQ 300
Score = 28.7 bits (61), Expect = 0.87
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 312 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
G FV F++ E+ KA+ +NG+ + + + V A+ +++
Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQ 130
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFE 156
GFV+F + + RA E+NGK+ V L V A + ++Q + K E
Sbjct: 261 GFVSFANAEDQSRAIEEMNGKQ-VGDLTLVVKSAVFREDKQNDENEKNE 308
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
E+GRSKG+GFV + S E A A+ MN + + KP+ V+ A ++E +
Sbjct: 135 ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGK 181
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
Q + FGT+T ++M E S+GFGF+ FS+ EEAT A+ +N + + L V A+
Sbjct: 119 QIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAK 178
Query: 420 R 422
R
Sbjct: 179 R 179
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +3
Query: 261 FGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
+ + SAK+M + S+G+GFV F+ + A+ EM G+I G +P+ V LA K
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKS-- 267
Query: 435 KAHL 446
KAH+
Sbjct: 268 KAHV 271
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 416
Q + + ++ KV+ + +G+++GFGFV F ++ KA E NG+ +G++P+ ++ A
Sbjct: 48 QAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRA 105
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 111
GFV+F+D D +A E NGK + +P+ + RA
Sbjct: 73 GFVSFKDSDQFLKAWREKNGK-YIGSRPVKLSRA 105
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 41.9 bits (94), Expect = 9e-05
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 7/54 (12%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 386
Q +GTI A+V+++ GRSKG+G+V F +PE A AV E++GR+V
Sbjct: 281 QEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMV 334
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 398
+ GR KGFG+V FS + A K V EMNG + +P
Sbjct: 402 QSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRP 435
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGK 90
G+V FE P+AA +A + NG + ++G+
Sbjct: 307 GYVDFETPEAA-KAAVAANGTKEIDGR 332
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 264 GTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 416
G++ A++ E GRSKGFG V F + +A ++ ++NG G +PL ++ A
Sbjct: 304 GSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355
Score = 29.5 bits (63), Expect = 0.50
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 264 GTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 440
G++ A + + ++GRS+G G V SS +EA A+ ++ + L V L DR A
Sbjct: 207 GSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL-----DRFA 261
Query: 441 H 443
H
Sbjct: 262 H 262
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 264 GTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV-TEMNGRIVG 389
G + + +++ L +G SKG + +S+ EEA A+ T N + +G
Sbjct: 90 GNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMG 133
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 258 PFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
PFG I + +D RSKGFG++ + +P A A+ +MNG + + + V L K
Sbjct: 362 PFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
+ + TSAK++++ G S+ +GFV FSS +E A+ M G + +PL +++A K
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +3
Query: 258 PFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 410
PFG I + K+ KG GFV +S A KA+ M G +VGT + +A
Sbjct: 319 PFGRILNIKIPF----GKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLA 365
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 297 DGRSKGFGFVCFSSPEEATKAVTEMNGRIV-GTKPLYVAL 413
+GRSKG + FS P +AT+A + GR+V GT+ + V +
Sbjct: 92 NGRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 35.9 bits (79), Expect = 0.006
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +3
Query: 264 GTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 401
G + AKV E GRSKGFGF+ F S + A A+ +NGR + K +
Sbjct: 521 GVLKQAKVETEKAGAGRSKGFGFMQFISHKYALMALRWLNGREITVKKI 569
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 FGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
FG + K+ + G R GF FV + A +A+ +NG + +P+ V A K+
Sbjct: 131 FGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKD 187
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 13 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 120
FV +D AAE A LNG E ++G+P+ V A K
Sbjct: 152 FVWMKDRKAAEEAMNSLNGTE-IDGRPIAVDWAVSK 186
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 32.7 bits (71), Expect = 0.054
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 264 GTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 407
G + S ++++ E G+ KG+GF + P A AV +N GT+ L V
Sbjct: 29 GPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRV 78
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 32.3 bits (70), Expect = 0.071
Identities = 15/56 (26%), Positives = 33/56 (58%)
Frame = +3
Query: 261 FGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
+G + S ++ + KGFG+V ++ ++A A++ G+ +G + L V L++ +E
Sbjct: 780 YGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA-GKQLGNRVLNVVLSKPRE 834
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 32.3 bits (70), Expect = 0.071
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 395
FG + VM + GRS+GFGF+ F +P+ + +++ ++G+I+ K
Sbjct: 186 FGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPK 235
Score = 30.7 bits (66), Expect = 0.22
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED- 431
FG + A +M++ GR +GFGFV + + E A +A + KP+ V A K
Sbjct: 270 FGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPVEVKRATPKASL 328
Query: 432 RKAH 443
R +H
Sbjct: 329 RDSH 332
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 261 FGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 371
FG ++S+K ++ E KG+GF CF + A ++ M
Sbjct: 319 FGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAM 357
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.9 bits (64), Expect = 0.38
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 306 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 446
S GFGFV F A A+ MNG ++ L + L+ + D A +
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEV 710
Score = 29.1 bits (62), Expect = 0.66
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV--ALAQRKEDRK 437
++G S+ F F+ F + E+A KA+ +N V T + V AL R + K
Sbjct: 41 KEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRALDYRSANEK 90
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 29.5 bits (63), Expect = 0.50
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 169 QISVVQTYASTPFDVQLSFVHVQHREAYPQLALCHSIQCKLFQQHLGLQKQQNP 8
++S++Q + PF V L V + + QL C + LF LGL + +P
Sbjct: 338 EVSILQRLQACPFVVNLVNVWSYNDNIFLQLDYCENGDLSLFLSELGLLQVMDP 391
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.50
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 676
P++PPS PSLPP+ P + P P P+ P A A P
Sbjct: 421 PSLPPSAP-----PSLPPS----APPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Query: 677 YRPA-PRAPA 703
PA P APA
Sbjct: 472 AAPAPPPAPA 481
Score = 28.7 bits (61), Expect = 0.87
Identities = 22/74 (29%), Positives = 29/74 (39%)
Frame = +2
Query: 479 AHAANGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAY 658
+ A + P PP G P+LPP G A T P P + PP P + SA
Sbjct: 382 SRAVSNPPAPPPAIPGRSAPALPP----LGNASRTS-TPPVPTPPSLPPSAPPSLPPSAP 436
Query: 659 ANMQPTYRPAPRAP 700
++ AP P
Sbjct: 437 PSLPMGAPAAPPLP 450
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/68 (30%), Positives = 28/68 (41%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 676
P PPS + P+ PP P P M +T ++PP+ P + SA A
Sbjct: 255 PIPPPSNGTVSSPPNSPPRP--IAPVSMNPAINST----SKPPLPPPSSRVSAAALAANK 308
Query: 677 YRPAPRAP 700
RP P P
Sbjct: 309 KRPPPPPP 316
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 676
P +PP + +P G P TP +PP ST++ ++M +
Sbjct: 244 PTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPPTNASTRSTGTSSSMAHS 303
Query: 677 Y--RPAPRAPA 703
Y P+P +P+
Sbjct: 304 YDSPPSPSSPS 314
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +1
Query: 124 ERQKELKRKFEQL--KSERLTRYQGVNL--YVKNLDDTID 231
++++ELK KFE+L K+ER R QG L + DD ID
Sbjct: 70 KKEEELKSKFEKLRQKNERRRRTQGKTLAETLAEEDDQID 109
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 533 VPSLPPA-PRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAH 706
V LPPA P P+ + + P + P PS+ + ++ PAP AP H
Sbjct: 1482 VSQLPPAVPNVPVPSMIPSVAQQPPS-SVAPATAPSSTLPPSQSSFAHVPSPAPPAPQH 1539
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNG 377
++G +G F F SPEEA V +NG
Sbjct: 268 DNGVFRGLAFANFHSPEEAKTVVQVLNG 295
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 255 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 395
A FG + + + L+ G KG+ + +++ E+A KAV E N ++ K
Sbjct: 31 ADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEK 79
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNG 377
E GR+KGF FV + + A KA ++G
Sbjct: 238 ETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 620 PPVRPSTQAASAYANMQPTYRP 685
P VRP+ +AAS+Y +P++ P
Sbjct: 134 PKVRPARRAASSYVPSRPSHVP 155
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 55 IELNGKELVEG--KPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI 228
++L +LVE K L+V + K E ++ K+ E LKS R +N Y+ L + I
Sbjct: 338 VDLETPKLVEELTKQLHVAESTLK-ENSEKFKQNSESLKS----RVDNLNDYITKLQNEI 392
Query: 229 DD 234
D+
Sbjct: 393 DE 394
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/52 (25%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +3
Query: 270 ITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
+TS +++++ RS+GFG+V F + + + A+ ++G + +P+ + +A+
Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFETADTLSAALA-LSGEDLMGRPVRITVAE 168
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 319 PKPLLRPSSSITFADVIVPNGAIL 248
P+ LL+PS +I+ I PNG ++
Sbjct: 399 PRALLKPSVAISTNKAIFPNGTVV 422
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 407
++G +G F F PEEA V +NG + + L V
Sbjct: 238 DNGIFRGLAFANFYRPEEAQVVVQTLNGYEINGRRLRV 275
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPAP--------RYYGPAQMTQIRP 595
P PP G +G P PP P RYY PA + P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 264 GTITSAKVM-LED-GRSKGFGFVCFSSPEEATKAV 362
G I ++M ED G+ KGFGFV F + KA+
Sbjct: 252 GQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM 286
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +2
Query: 446 NISVHAENG*YAHAANGPNIPPSGASGFFVPSLPPAPRYYGP-AQMTQIRPTTP 604
N + H E+ ++ N A PS PP PR+ P TQ P P
Sbjct: 306 NRTQHTEDNYNKDVSDAQNSLGQSAVDLTTPSSPPIPRHTKPKLSTTQSTPVKP 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,122
Number of Sequences: 5004
Number of extensions: 57799
Number of successful extensions: 279
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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