Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20106
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 109 3e-24
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 48 8e-06
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 48 8e-06
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 45 5e-05
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 43 3e-04
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 42 5e-04
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 37 0.014
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 36 0.025
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 36 0.025
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 35 0.075
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 35 0.075
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 34 0.100
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 34 0.100
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.100
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.100
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.17
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 33 0.30
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05) 33 0.30
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 32 0.40
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83) 32 0.53
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06) 31 0.70
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 31 0.93
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 31 1.2
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 31 1.2
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 30 1.6
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 30 2.1
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 30 2.1
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 29 3.7
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_51172| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 29 3.7
SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29) 29 3.7
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 29 4.9
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_28085| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_12122| Best HMM Match : DUF573 (HMM E-Value=0.74) 29 4.9
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 28 6.5
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 28 6.5
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1) 28 6.5
SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018) 28 6.5
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027) 28 6.5
SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058) 28 6.5
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_14241| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74) 28 8.6
SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 28 8.6
SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 28 8.6
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 28 8.6
SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 109 bits (261), Expect = 3e-24
Identities = 52/68 (76%), Positives = 61/68 (89%), Gaps = 1/68 (1%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 422
+ +P+GTI+SAKVM +D G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQR
Sbjct: 230 EEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQR 289
Query: 423 KEDRKAHL 446
+E+RKA L
Sbjct: 290 REERKAQL 297
Score = 92.3 bits (219), Expect = 4e-19
Identities = 43/75 (57%), Positives = 57/75 (76%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQ 189
GFV+FE P+ AE A LNGKE + G+ L+ GRA+K+AER E+K + E+ + ER+ R+Q
Sbjct: 152 GFVSFETPEEAEEAVNVLNGKE-IGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQ 210
Query: 190 GVNLYVKNLDDTIDD 234
GVNLY+KNLDD IDD
Sbjct: 211 GVNLYIKNLDDPIDD 225
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +3
Query: 255 APFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 431
A G I S KVM + +G+SKGFGFV F +PEEA +AV +NG+ +G + L+ A+++ +
Sbjct: 130 AEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAE 189
Query: 432 RKAHL 446
R A +
Sbjct: 190 RAAEV 194
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKEL 141
GFV F P+ A +A E+NG+ L+ KPLYV AQ++ ER+ +L
Sbjct: 255 GFVCFSSPEEATKAVTEMNGRILI-SKPLYVALAQRREERKAQL 297
Score = 31.5 bits (68), Expect = 0.70
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 13 FVAFEDP--DAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY 186
+V F+ P DAA A ++G L+ K ++VGR K ER +++ + ++
Sbjct: 58 YVNFQQPGHDAALEAIARVDGM-LLNDKKVFVGRWMSKKERIEKMGTQPKKF-------- 108
Query: 187 QGVNLYVKNLDDTIDD 234
N+YVKN D +DD
Sbjct: 109 --TNVYVKNFGDDMDD 122
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 48.0 bits (109), Expect = 8e-06
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
Q PFGT+ SAKV ++ SK FGFV + + A A+ MNG +G K L V L +
Sbjct: 280 QTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKR 339
Query: 420 RKEDRKAH 443
K+ + +
Sbjct: 340 PKDANRPY 347
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 48.0 bits (109), Expect = 8e-06
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
Q PFGT+ SAKV ++ SK FGFV + + A A+ MNG +G K L V L +
Sbjct: 295 QTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKR 354
Query: 420 RKEDRKAH 443
K+ + +
Sbjct: 355 PKDANRPY 362
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 48.0 bits (109), Expect = 8e-06
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +3
Query: 258 PFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 431
PFGT+ S +++ E RSKG+GFV F E A +A+ +MNG + +PL + + D
Sbjct: 264 PFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKIGPVTERGD 323
Query: 432 RKAH 443
A+
Sbjct: 324 SSAY 327
Score = 35.1 bits (77), Expect = 0.057
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAE 126
GFV F + +AA+RA ++NG EL G+PL +G ++ +
Sbjct: 286 GFVQFREAEAAKRAMEQMNGFELA-GRPLKIGPVTERGD 323
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 440
E GR +GFGFV F S EE KA+ E +G+ +P+ V AQ + +R A
Sbjct: 40 ETGRPRGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQAQPRGERGA 88
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Frame = +3
Query: 264 GTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
G +TS K++ + G+S G+ FV + +P++A KAV EMNG + K L V+ A+
Sbjct: 51 GNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFAR 104
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 258 PFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGR 380
PFG I ++KV+ + G +G GFV F EA A+ ++N +
Sbjct: 135 PFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDLNNK 176
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +3
Query: 255 APFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 377
+P+G IT+ ++ L+ KG+GFV S+ EEA A+ +NG
Sbjct: 293 SPYGAITNIELKLD----KGYGFVNMSNYEEACHAICCLNG 329
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 431
E GR +GFGFV F S EE KA+ E +G+ + +P+ V A+ + D
Sbjct: 132 ETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPRGD 177
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
E GRS+GFGFV S ++ A+ +MN VG + + VALA K + +
Sbjct: 44 ESGRSRGFGFVLLQSADQIAPAIEKMNQSSVGGRNITVALALDKTENR 91
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +3
Query: 270 ITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
+ S KV+ E GR +GFGFV F S +E KA+ + +G + +P+ V AQ + +R
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPRGER 91
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +3
Query: 261 FGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 431
FG I ++ D G SKGF F+ F+S + + A+ MNG+ + +P+ V+ A +KE
Sbjct: 123 FGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKES 182
Query: 432 R 434
+
Sbjct: 183 K 183
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 410
++ RS+GFGFV F++PE+A AV +NG+ V + L +A
Sbjct: 94 QEPRSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIA 132
Score = 31.1 bits (67), Expect = 0.93
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELVEGKPLYV 102
GFV F +P+ A+ A LNGKE V+G+ L +
Sbjct: 102 GFVTFANPEDAQTAVKSLNGKE-VQGRTLKI 131
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +3
Query: 300 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
G S GFGFV +++ E+A KA+ ++NG +G K L VA ++
Sbjct: 85 GWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSR 124
Score = 31.5 bits (68), Expect = 0.70
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 264 GTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 401
G + +M + R KGF FV ++ EEA A+ +NG + KPL
Sbjct: 299 GIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQTLNGFMYTNKPL 346
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 303 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 431
+SKGFGFV F E+A KA+ EM+ +G K + A RK +
Sbjct: 552 KSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNN 594
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +3
Query: 264 GTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
G + +V+ ++GRS+GFG+ F+S E+ KA+ E+NG + + + A K R
Sbjct: 204 GLSATCRVITQEGRSRGFGYADFTSKEDYNKAL-ELNGEDCCGREIRINPANSKPSR 259
Score = 35.9 bits (79), Expect = 0.033
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 255 APFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
A F ++AKV+ E G S+GFGFV + E A K ++EM G V + + + A +
Sbjct: 307 AAFEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFASPRT 366
Query: 429 D 431
+
Sbjct: 367 E 367
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 37.1 bits (82), Expect = 0.014
Identities = 25/69 (36%), Positives = 32/69 (46%)
Frame = +2
Query: 485 AANGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYAN 664
A P IPP+ + F+PS PP P + PA PT P + PP P+ A N
Sbjct: 290 APPNPYIPPAPPN-LFIPSAPPNP-HIPPAPPNPYIPTAPPNPSIPPAPPNPSIPPAPPN 347
Query: 665 MQPTYRPAP 691
P+ PAP
Sbjct: 348 --PSIPPAP 354
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 36.3 bits (80), Expect = 0.025
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 261 FGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 362
+GTI +M DGRS+GFGFV + S + + +
Sbjct: 73 WGTIVDCVIMKRDGRSRGFGFVTYESSDSVNEVL 106
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 36.3 bits (80), Expect = 0.025
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +3
Query: 303 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
R +GFGFV F++ EA KA ++NG IV + + V+L +
Sbjct: 122 RIEGFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSLCMEQ 162
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 34.7 bits (76), Expect = 0.075
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 261 FGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEM 371
+GTI S K +L+ + KG+GFV F SP A KAV +
Sbjct: 123 YGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAAL 161
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 34.7 bits (76), Expect = 0.075
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +3
Query: 255 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 374
A + + AK++ + +SKG+GFV F P + KA+ EMN
Sbjct: 238 AKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMREMN 279
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 34.3 bits (75), Expect = 0.100
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 258 PFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 419
PFG IT ++ ++ SK GFGFV F E+ A+ MN + + + V LA+
Sbjct: 27 PFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAK 82
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 34.3 bits (75), Expect = 0.100
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 312 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 431
G GFV F PE A KA E++G + + L++ A+ K++
Sbjct: 283 GIGFVTFLMPEHAVKAFNELDGTVFQGRLLHILPAKAKKE 322
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 34.3 bits (75), Expect = 0.100
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 264 GTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 410
G +T A+V + +G S+GF FV +++ EEA K NGR V + VA
Sbjct: 230 GNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRVA 280
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +3
Query: 252 IAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM---NGRIVGTKPLYVALA 416
++P+G I ++ + G SKG+GFV +++ E A +A ++ + +G + L VA A
Sbjct: 133 MSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQLLNTASKYIGGRILRVAFA 192
Query: 417 Q 419
+
Sbjct: 193 E 193
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 34.3 bits (75), Expect = 0.100
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 246 QRIAPFGTITSAKVMLED----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 413
+ + FG ++ A V + R GFGFV F++ +A KA+ EMN + + +P+ V
Sbjct: 265 ETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALEEMNAKKILGRPVAVDW 324
Query: 414 AQRK 425
A K
Sbjct: 325 AVPK 328
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +3
Query: 303 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
R +GFG+V F+ E+A KA + N + + +P+++ +++K K
Sbjct: 60 RCRGFGYVTFALEEDALKA--KDNIKSIKGRPIHLDFSEKKARTK 102
>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +3
Query: 288 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 401
++++GR KG FV S E+A +A+ E++G ++ KP+
Sbjct: 285 LMKEGRMKGQAFVTLPSEEKAKRALREVHGYMLHGKPI 322
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 258 PFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 407
PFG I + + + + KGF FV + PE A A+ +MNG ++G + + V
Sbjct: 124 PFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKV 175
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Frame = +1
Query: 1 RHEGF--VAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 174
+H+GF V ++ P+AA+ A ++NG L+ G+ + VGR + L +FEQ ++++
Sbjct: 141 KHKGFAFVEYDLPEAAQLALEQMNG-VLLGGRNIKVGR-PSNVPQAAPLIEQFEQ-EAKK 197
Query: 175 LTRYQGVNLYVKNLDDTI 228
R +++ L+D I
Sbjct: 198 YARIYIASVHPDLLEDDI 215
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 374
FG + + E G+ KG+GF+ + + + A A+ MN
Sbjct: 222 FGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMN 261
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +3
Query: 282 KVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 425
+V E RS+GF V F + E A KA+ EMNG V + V++A+R+
Sbjct: 136 RVNFEKNRSQGF--VTFDTWEAADKAIDEMNGLKVQHVHIRVSMARRQ 181
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 32.7 bits (71), Expect = 0.30
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 536 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPS-TQAASAYANMQPTYRP 685
PS PP P Y P Q P P PP +PS S+Y QP+Y P
Sbjct: 514 PSYPPTPSSYLPTQ-----PYYPPPQPYPPTQPSYPPTPSSYPPTQPSYPP 559
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +2
Query: 536 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 691
PS PP +Y P Q P TP ++ PP +PS Y P+Y P P
Sbjct: 170 PSYPPTQPFYPPTQ--PFYPPTP--SSYPPTQPS------YPPTAPSYPPTP 211
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 32.7 bits (71), Expect = 0.30
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 536 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPA 703
P LP +P PA + P P+ + PP+R + ++S A T PR PA
Sbjct: 481 PELPGSPGDSPPATSPKQPPLPPKHSNGPPLRQTPMSSSLSATPVSTPDTTPRTPA 536
>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
Length = 905
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 503 IPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPV 628
+PP+G +P +PP P Y P P P+++ +PPV
Sbjct: 374 LPPTGVPPQMLPMMPPRPTVYHPPADDTYNPEQPQFD-RPPV 414
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/70 (30%), Positives = 25/70 (35%)
Frame = +2
Query: 491 NGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQ 670
+ P PP G +P PPA GP + + P P PP P MQ
Sbjct: 1220 SAPRPPPMGHHMMNMPPPPPAMPPDGPPKFMGLPPPPPGMRPMPPQPPFMPPP---PRMQ 1276
Query: 671 PTYRPAPRAP 700
P P P P
Sbjct: 1277 PPGPPGPPGP 1286
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 258 PFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV 362
P+G I ++ + G+SKGFG+V + + E A +A+
Sbjct: 85 PYGAIEDLSIIRTQTGKSKGFGYVTYENAESAQRAL 120
>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
Length = 242
Score = 31.9 bits (69), Expect = 0.53
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 536 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 700
P+ P P ++GP + RPT P + P+ P +A P P PR+P
Sbjct: 33 PTTPSPPSHHGPISLRPHRPTIP--SPHDPITPRPHRPTAPRPHDP-IAPRPRSP 84
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.5 bits (68), Expect = 0.70
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 261 FGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 431
FG I +V L+ RS+GFGFV F E+A K V + RI G + V L + KE+
Sbjct: 138 FGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDA-KNVLSTSHRIQG-RLCEVRLPRPKEE 194
>SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)
Length = 618
Score = 31.5 bits (68), Expect = 0.70
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +2
Query: 509 PSG-ASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAY---ANMQPT 676
PSG + PS P PRYY P+ Q R P N QP PS S Y N+Q
Sbjct: 52 PSGNLQSRYYPSGNPQPRYY-PSGNPQSR-YYPSGNPQPRYYPSGNPQSRYYPSGNLQSR 109
Query: 677 YRPA 688
Y P+
Sbjct: 110 YYPS 113
Score = 30.7 bits (66), Expect = 1.2
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Frame = +2
Query: 425 GGP*SALNISVHAENG*YAHAANGPNIPPSG-ASGFFVPSLPPAPRYYGPAQMTQIRPTT 601
G P S S + ++ Y P PSG + PS P PRYY P+ Q R
Sbjct: 44 GNPQSRYYPSGNLQSRYYPSGNPQPRYYPSGNPQSRYYPSGNPQPRYY-PSGNPQSR-YY 101
Query: 602 PRWNAQPPVRPSTQAASAY---ANMQPTYRPA 688
P N Q PS S Y N+Q Y P+
Sbjct: 102 PSGNLQSRYYPSGNPQSRYYPSGNLQSRYYPS 133
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Frame = +2
Query: 509 PSG-ASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAY---ANMQPT 676
PSG + PS P PRYY + TP N QP PS S Y N Q
Sbjct: 532 PSGNLQSRYYPSGNPQPRYYPSGNHSP--GITPSGNPQPRYYPSGNLQSRYYPSGNTQSR 589
Query: 677 YRPA 688
Y P+
Sbjct: 590 YYPS 593
Score = 28.3 bits (60), Expect = 6.5
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +2
Query: 509 PSG-ASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAY---ANMQPT 676
PSG + PS P PRYY P+ Q R P N Q PS S Y N+Q
Sbjct: 352 PSGNPQSRYYPSGNPQPRYY-PSGNPQSR-YYPSGNPQSRYYPSGNLQSRYYPSGNLQSR 409
Query: 677 YRPA 688
Y P+
Sbjct: 410 YYPS 413
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 31.1 bits (67), Expect = 0.93
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +2
Query: 497 PNIP-PSGASGFFVPSLP---PAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYAN 664
P IP P+ AS + PS P P+ PA + PT+P ++ P + A+ +Y+
Sbjct: 400 PYIPSPAAASPGYSPSSPAFMPSSPSMSPASPSY-SPTSPGYSPSSPSSGYSPASPSYSP 458
Query: 665 MQPTYRP 685
P+Y P
Sbjct: 459 TSPSYSP 465
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 303 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 428
R +GFGFV F S A KA + ++ K + V AQ KE
Sbjct: 10 RHRGFGFVTFESENSADKA-CDTQYHLINNKKVEVKKAQPKE 50
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 315 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 431
FGFV F + + A +AV + +GRI+ K + V + + D
Sbjct: 82 FGFVQFETEKGADEAVAKEHGRIINGKKIDVRIVNSRAD 120
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 237 TSAQRIAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 416
TS Q + +GTI ++ K FGFV FSS E + + + L+ AL
Sbjct: 406 TSLQFLVEYGTILEIRL-----NPKNFGFVIFSSAEPVQQILANKKHFLSPMHSLHSALL 460
Query: 417 QRKEDR 434
+DR
Sbjct: 461 SANQDR 466
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
E G+ KG+GF + E A A+ +NG + + L V A +++++
Sbjct: 61 ETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRVDSAASEKNKE 108
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +2
Query: 506 PPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 685
P S + LP P P T I P++ + N+ PP PSTQ S + T P
Sbjct: 236 PNSHQPQLLLTQLPSTP---APINPTPINPSSYQPNSHPPQLPSTQLPS--TQLPSTQLP 290
Query: 686 APRAPA 703
+ + P+
Sbjct: 291 STQLPS 296
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/68 (32%), Positives = 23/68 (33%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 676
PN PP A + P PP P P P P PP P N P
Sbjct: 165 PNPPPPNAP-YPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPN--PP 221
Query: 677 YRPAPRAP 700
Y P P AP
Sbjct: 222 YPPPPNAP 229
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 551 APRYYGPAQMTQIRPTTPRWN-AQPPVRPSTQAASAYANMQPTYRP 685
+PR Y P +T +PR + PP RP T SA +P +P
Sbjct: 613 SPRLYTPKSITPKFILSPRQTLSAPPSRPKTAPTSAQRTPEPIRKP 658
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 494 GPNIPPSGASGFFVP--SLPPAPRYYGPAQMTQ 586
GPN+PP G +P P AP +GP Q Q
Sbjct: 1092 GPNVPPGSNMGNMMPQGGPPGAPPSFGPPQSLQ 1124
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 10 GFVAFEDPDAAERACIELNGKELV 81
GFV FED A+ A E NGKE++
Sbjct: 39 GFVEFEDDRDADDAVYECNGKEML 62
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 264 GTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGR 380
G I ++M++ G +KGF F FS+ +EA AV +++ +
Sbjct: 176 GHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKKLDNK 216
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 29.1 bits (62), Expect = 3.7
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Frame = +2
Query: 497 PNIPPSGASGFFVPSLPPA-------PRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASA 655
P+ PPS S P PP P Y P Q ++ TTP +Q P+RP+ + S
Sbjct: 92 PHTPPSCQSNTPRPLTPPPRQSNTTQPPAYPPRQSYALQQTTPLHTSQ-PLRPTPRRPS- 149
Query: 656 YANMQPTYRPAPR 694
QP + P PR
Sbjct: 150 -DTPQP-FTPPPR 160
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 530 FVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 685
F P P + P Q +Q +P P Q P RP Q + ++QP +P
Sbjct: 480 FQPGQSPQQPFL-PDQQSQ-KPFRPEQQPQQPFRPGQQPQQPFRSVQPPQQP 529
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 563 YGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 685
+ P Q Q +P+ P Q P RP Q + ++QP +P
Sbjct: 580 FRPGQQPQ-QPSRPGQQHQQPFRPEQQPQQPFRSVQPPQQP 619
>SB_51172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/72 (29%), Positives = 26/72 (36%)
Frame = +2
Query: 485 AANGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYAN 664
A PN PP A+ P AP + P Q + + QP Q S Y
Sbjct: 78 ALEKPNRPPGQAAQNGQGGRPQAPYHQNPYQQQ-----SHSYPGQPGQPYQAQGQSPYQQ 132
Query: 665 MQPTYRPAPRAP 700
QP Y P+ P
Sbjct: 133 NQPPYNAPPQQP 144
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 506 PPSGASGFFVPS-LPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYR 682
PPS +PS PP+P Y P+ + P+ PR+ PP PS+ Y Y
Sbjct: 321 PPSPIRYPPLPSRYPPSPPRY-PSSHPRYPPSPPRYPPSPPRYPSSH--PRYPPSPLRYL 377
Query: 683 PAP 691
P+P
Sbjct: 378 PSP 380
>SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
Length = 447
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Frame = +2
Query: 500 NIPP-SGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVR-PSTQAASAY----A 661
N PP +G + P P YY P Q TP +N QPP P Y
Sbjct: 309 NAPPFNGQPPYNTPPFNGQPPYYTPPFNGQPLYHTPPFNGQPPYNTPPFNGQPLYHTPPF 368
Query: 662 NMQPTYRPAP 691
N QP Y P
Sbjct: 369 NGQPPYNTPP 378
>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1933
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 673 GLHICICRCCLCARPYRGLCIPPWSCRSYLSHLSW 569
GL +C L A P W R+Y SH+SW
Sbjct: 1366 GLQLCAFEIGLFALGLHNRTSPNWLSRTYSSHVSW 1400
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 291 LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 395
L+ GRSK +GFV F E KA+ I G K
Sbjct: 97 LKSGRSKKYGFVFFKDEEACEKAMGNQPHFIEGQK 131
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 261 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 407
+G I + ++ + G+ KGF F+C+ AV NG +G + + V
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRV 52
>SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = -1
Query: 661 CICRC---CLCARPYRGLCIPPW 602
C+CRC CLCA Y + +PP+
Sbjct: 16 CLCRCLCRCLCADVYVPMSMPPY 38
>SB_28085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Frame = -1
Query: 577 LSWS--IVTWCWRERWYKKSTCTTRWNIWPICC 485
LSWS I W W + C WN W CC
Sbjct: 34 LSWSPMIPCWAWDPGYCPPHECAG-WNTWQECC 65
>SB_12122| Best HMM Match : DUF573 (HMM E-Value=0.74)
Length = 67
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 109 AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTID 231
A++K K K K+ Q+K+ T++ YVKN+ D
Sbjct: 18 ARRKTSLIKNFKTKYRQIKNRLNTKFSRSIRYVKNIGKAFD 58
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 309 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 434
+ +GFV F+ E A +A+ +NG + L V+LA + R
Sbjct: 35 RDYGFVYFAKRESAVQAIDGINGAYIDGCKLEVSLAIPQSSR 76
>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 294 EDGRSKGFGFVCFSSPEEATKAVTEMNGRI 383
E+G++ G GFV F+SPE A +A+ + +I
Sbjct: 74 EEGKTTGEGFVEFASPEIAGQAMQKHKEKI 103
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 1 RHEGFVAFEDPDAAERACIELNGKELV 81
R GFV F+D AE A +LNG++L+
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLI 748
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 309 KGFGFVCFSSPEEATKAVTEMNGR-IVGTK 395
+G+GFV F +A AV ++NGR ++G +
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLIGER 751
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/66 (31%), Positives = 23/66 (34%)
Frame = +2
Query: 506 PPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 685
PP G P PP P P+Q P P NA PP P +A P P
Sbjct: 921 PPPPPPGGNAPLPPPPPGGSAPSQ-----PPPPGGNAPPPPPPPGGSAPPPGGGAPPLPP 975
Query: 686 APRAPA 703
P A
Sbjct: 976 PPGGSA 981
>SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1)
Length = 762
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 364 VTALVASSGEEKQTNPKPLLRPSSSITFADVI 269
++ + +S KQT PK L+RP S D I
Sbjct: 651 ISGIPSSRSSRKQTEPKKLVRPESEYELEDEI 682
>SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)
Length = 482
Score = 28.3 bits (60), Expect = 6.5
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Frame = +2
Query: 545 PPAPRYYGPAQ-MTQIRP---TT--PRWNAQPPVRPSTQAASAYANMQPTYR----PAPR 694
PP+P++Y P Q + Q+ P TT P A PS AS P+ P+P+
Sbjct: 15 PPSPKHYTPTQPINQVPPPALTTAIPTVAAYQAAHPSAINASPTTVGSPSTTAPSVPSPQ 74
Query: 695 APAHL 709
AP H+
Sbjct: 75 APTHI 79
>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
Length = 253
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 321 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 437
+V F E+A KAV ++N R +P+Y L+ + R+
Sbjct: 116 YVKFRYEEDAEKAVNDLNNRWYNGQPIYAELSPVTDFRR 154
>SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)
Length = 820
Score = 28.3 bits (60), Expect = 6.5
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +2
Query: 509 PSG-ASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAY---ANMQPT 676
PSG + PS P PRYY P+ Q R P N Q PS S Y N+Q
Sbjct: 199 PSGNLQSRYYPSGNPQPRYY-PSGNPQSR-YYPSGNLQSRYYPSGNPQSRYYPSGNLQSR 256
Query: 677 YRPA 688
Y P+
Sbjct: 257 YYPS 260
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +2
Query: 566 GPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 676
G TQ+R TT QPP PS QA A PT
Sbjct: 1151 GNEHSTQVRNTTQAKPPQPPPVPSVQAPPAPPPAPPT 1187
>SB_14241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 539 SLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPST--QAASAYANMQPTYRPAPRAP 700
SL APRYYG +T +PR+ QP + ++ QA Y + T P R P
Sbjct: 41 SLLQAPRYYGQPVITDTSLLRSPRYYGQPAITDTSLLQAPRYYEHPVITDSPLLRTP 97
>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
Length = 328
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = -1
Query: 691 RCWSVSGLHICICRCCLCAR--PYRGLCIPPWSCRSYLSHLSWSIVTWCWRERWYKKSTC 518
RC SV C C C CA + LC P WS L S++ CW++ + S
Sbjct: 231 RC-SVCTCCPCDCTCLQCAPCIVFSALCCPFWSL-----CLLCSMINSCWKQPFQSTSAL 284
Query: 517 TTR 509
R
Sbjct: 285 VLR 287
>SB_26621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 313 PLLRPSSSITFADVIVPNGAILCADVHHQL 224
PLL SSS+ F DV+ NG +C H L
Sbjct: 157 PLLMFSSSLHFFDVVSYNGVQICRMTHVSL 186
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 306 SKGFGFVCFSSPEEATKAVTEMNG 377
S+GF +V + PEE KA+ M+G
Sbjct: 1197 SRGFAYVEYVDPEECEKALKHMDG 1220
>SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 599
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Frame = +2
Query: 458 HAENG*YAHAANGPNIPPSGASGFFVPSLPPAPRYYGPAQMTQIRPTT----PRWNAQPP 625
+ NG A P +PP A G P P+ Y + + P++ WN
Sbjct: 136 YKRNGDPALLTYNPFLPPVHADGSLCDLFPEKPQPYSTMSLPPVSPSSSMLGSSWNFYNN 195
Query: 626 VRPSTQAASAYANMQPTYRPAPRA 697
ST AAS + Y P+ RA
Sbjct: 196 -GMSTGAASMVSINSEEYAPSSRA 218
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 532 CTIAPSSTTLLWTSSNDSNKTYNSKVE 612
CT+ ST L W++ D + YN +E
Sbjct: 836 CTVKECSTDLSWSTMTDMERVYNEFLE 862
>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1115
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 667 HICICRCCLCARPYRGLCIPPWSCRS 590
++ CR R RGLC+PPW R+
Sbjct: 465 YVLSCRV-RTGRSIRGLCLPPWCSRA 489
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 596 TTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAH 706
T+ A+PP RP A A + PT R P H
Sbjct: 584 TSTEGPARPPARPPPTAKPAVNRLSPTRRSLPPVATH 620
>SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 27.9 bits (59), Expect = 8.6
Identities = 25/70 (35%), Positives = 29/70 (41%)
Frame = +2
Query: 506 PPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 685
PP+ PSLPP P R TTP PP+ ST Y T RP
Sbjct: 55 PPNEPHAPNTPSLPPDPCAPPTLNTEPTRETTPT----PPLSFST----GY-----TTRP 101
Query: 686 APRAPAHLHK 715
AP +P LH+
Sbjct: 102 APNSPLTLHE 111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,513,934
Number of Sequences: 59808
Number of extensions: 480165
Number of successful extensions: 1785
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1764
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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