Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20105
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    25   5.2  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   6.8  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    24   9.0  

>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 49  LVTLVCGTQAFYMFGHEFSRTRLGDAIDKTSLKILKE 159
           +V LV GT AF+M   EF   +    +  +   ILKE
Sbjct: 279 VVILVPGTLAFFMVASEFGLIQKTSIVTLSVCGILKE 315


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +1

Query: 94  HEFSRTRLGDAIDKTSLKILKESYNLADDKNVIAS 198
           + F+R   G       +K+L E+Y+L D+++++ +
Sbjct: 504 YAFARVYSGQVKKGQKVKVLGENYSLEDEEDMVVA 538


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 398 SWPTRSPGQR 427
           +WPTRSPG R
Sbjct: 174 AWPTRSPGDR 183


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = -2

Query: 212 ITPRGDAITFLSSARL*DSLRIFKEVLSMASPSLVLENS*PNM*NACVPHTNVTNNSSLS 33
           + P  D        R+ DS  +F   + MA  S++L+N   ++ NA    T   N  +++
Sbjct: 476 VPPLTDNQLLAGEQRIADSFNVF---VKMAELSILLQNVLQHLFNARAVMTMSKNRRTVA 532

Query: 32  MTVALRLIS 6
             ++  LIS
Sbjct: 533 QKISKYLIS 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,518
Number of Sequences: 5004
Number of extensions: 34816
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)