Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20105
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809...    31   0.31 
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686...    31   0.54 
01_01_0792 - 6171400-6171957                                           30   0.95 
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    29   1.3  
11_02_0011 - 7337618-7338496,7338596-7338991                           27   5.1  
11_02_0012 - 7346282-7347136,7347234-7347593                           27   6.7  
06_03_1222 - 28521799-28521900,28521952-28522029,28522292-285243...    27   8.8  

>07_03_1696 -
           28779455-28779733,28779813-28780074,28780805-28780956,
           28781765-28781961,28782258-28782462,28782737-28782982,
           28783603-28783719,28784206-28784397,28784480-28784693,
           28784835-28784926,28784952-28785001,28785494-28785812,
           28785908-28786068,28786407-28786650,28787212-28787467,
           28787634-28787834,28788568-28788910,28789003-28789064,
           28789645-28789851,28790170-28790978
          Length = 1535

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 247 CTVKEEIREILGGGEAQESSHTYGLLNQRYAEFDPKFLTVANK 375
           C +KE+  E+ G  + +E+S     LN +Y   + K+  VANK
Sbjct: 844 CPLKEQTSEVHGARKRKETSPADSGLNSQYGVTESKYELVANK 886


>09_06_0317 -
           22265786-22267618,22267874-22268446,22268546-22268677,
           22268931-22269137,22269287-22269388,22270742-22271032
          Length = 1045

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -3

Query: 301 TLEPPLPQGFPLSLP*LCTGSRLVSRKAA 215
           +L PPLP G PLS P +C  ++  S KAA
Sbjct: 751 SLRPPLPPGLPLSSPFVCPTTQ-TSEKAA 778


>01_01_0792 - 6171400-6171957
          Length = 185

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 202 LGVMLLLSLIRVWSRCTVKEEIREILGGGEA 294
           +G++  L  + +W  CT +   R++ GGG A
Sbjct: 30  IGILSFLVYLAIWYTCTRRRRSRQLRGGGSA 60


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 181 KNVIASPLGVMLLLSLIRVWSRCTVKEEIREILGGGEAQESSHTY 315
           +NV  SPL + + LSL+   +    ++++   LGG  + E  H +
Sbjct: 35  RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAF 79


>11_02_0011 - 7337618-7338496,7338596-7338991
          Length = 424

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 169 LADDKNVIASPLGVMLLLSLIRVWSRCTVKEEIREILGGGEAQE 300
           ++ +KN++ SP  +   L+L+   +R T  +E+  +LG     +
Sbjct: 27  VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDD 70


>11_02_0012 - 7346282-7347136,7347234-7347593
          Length = 404

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +1

Query: 151 LKESYNLADD-----KNVIASPLGVMLLLSLIRVWSRCTVKEEIREILGGGEAQE 300
           L+ +  LADD     +NV+ SP+ +   L+L+   +R T  +E+  +LG     +
Sbjct: 16  LRLAKRLADDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDD 70


>06_03_1222 -
           28521799-28521900,28521952-28522029,28522292-28524335,
           28525188-28525303
          Length = 779

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 322 LNQRYAEFDPKFLTVANKIYVSDQYKLADAFSRTANL 432
           L +  A+ DP FL +      S QY+L +AF    NL
Sbjct: 531 LGKNAAQLDPNFLELPVYWTRSRQYRLLNAFPNALNL 567


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,575,168
Number of Sequences: 37544
Number of extensions: 265690
Number of successful extensions: 715
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)