Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20105
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17269| Best HMM Match : RRM_1 (HMM E-Value=8.2)                     30   0.97 
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)                      28   3.9  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)          27   5.2  
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049)                  27   9.1  

>SB_17269| Best HMM Match : RRM_1 (HMM E-Value=8.2)
          Length = 157

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = -3

Query: 316 RMCVMTLEPPLPQGFPLSLP*LCTGSRLVS-----RKAAASRR-EETLSHS-CRQ 173
           R+C+ T  PPLP  F  ++P + T S   +     R +  SRR + ++ H  CRQ
Sbjct: 81  RICLSTFSPPLPPTFSPTIPPIITSSNFHTTATDGRSSCRSRRGKPSVQHPFCRQ 135


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 189  DSVSSRRDAAAFLDTSLEPVHSQGRDKGNPWGRGGSRVITHIRIIKSAL 335
            D  +   D A F+   L+      R  G+PW   G++ I+H + +K+ L
Sbjct: 4293 DEQTDEFDMATFMIDRLKVFIGISRSAGDPWQARGAQYISHTKQLKNLL 4341


>SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)
          Length = 607

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 222 FLDTSLEPVHSQGRDKGNPWGRGGSR 299
           FL TSL  V  +GRD GN   + GSR
Sbjct: 301 FLHTSLSSVGLRGRDLGNQSSQPGSR 326


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 163  YNLADDKNVIASPLGVMLLLSLIRVWSRCTVKEEIREILGGGEAQESSHTYGL 321
            YN+  DKN     LG+     +    S  +V ++   +LG   A E+ H+ G+
Sbjct: 867  YNICKDKNQPCDTLGLARTRGMCSFPSSASVNQDNGLMLGMTLAHETGHSMGI 919


>SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)
          Length = 253

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 265 IREILGGGEAQESSHTYGLLNQRYAEFDPKFLTVANKIYVSDQY 396
           I  I GGGE  E  H  G+L  +   FD  F   AN + +S +Y
Sbjct: 81  IANIRGGGEYGEDWHQAGMLGNKQNVFD-DFQAAANYL-ISHEY 122


>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6116

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +1

Query: 193  ASPLGVMLLLSLIRVWSRCTVKEEIREIL 279
            A+PL ++++++ + +W R T + E+RE L
Sbjct: 5801 AAPLLLVIIIAAVLLWRRKTRRRELREQL 5829


>SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049)
          Length = 508

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 190 IASPLGVMLLLSLIRVWSRCTVKEEIRE 273
           ++S L V+LLL L+ + S   V+EEIRE
Sbjct: 1   MSSKLVVLLLLGLVVLASCAPVREEIRE 28


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,180,612
Number of Sequences: 59808
Number of extensions: 291126
Number of successful extensions: 1716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1716
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)