Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20105
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   4.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   4.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   4.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 246 VHSQGRDKGNPWGRGGSR 299
           +   GR KG   G+GGSR
Sbjct: 75  IEETGRGKGRGHGKGGSR 92



 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 255 QGRDKGNPWGRGGSR 299
           +G  KG   GRGG+R
Sbjct: 84  RGHGKGGSRGRGGNR 98


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 361 SRISGRILRNADLIIRMCV 305
           SRIS RI RN  L+   C+
Sbjct: 34  SRISNRISRNRVLLRGQCI 52


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 235 LVSRKAAASRREETLSHSCRQLGCRIP 155
           L+  + +   RE+ ++++CR L   +P
Sbjct: 429 LILGELSEKLREDVINYNCRSLVASVP 455


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 235 LVSRKAAASRREETLSHSCRQLGCRIP 155
           L+  + +   RE+ ++++CR L   +P
Sbjct: 397 LILGELSEKLREDVINYNCRSLVASVP 423


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 409 RRPTYTGRKRIFYWRQSR 356
           R P+  GRK+   WR+ R
Sbjct: 121 RNPSVVGRKKSSGWRKLR 138


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 233 ESGAGAQSRKR*GKSLGEGRLKSHHTHT 316
           +SGA A  R     S  E   +S HT T
Sbjct: 264 DSGAAASDRPPASASSNEHEAESEHTST 291


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 220 LSLIRVWSRCTVKE 261
           L +I +W + TVKE
Sbjct: 53  LPVIEIWDQMTVKE 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,496
Number of Sequences: 438
Number of extensions: 2445
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)