Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20105
(441 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi... 33 0.085
At3g45220.1 68416.m04880 serpin, putative / serine protease inhi... 32 0.20
At5g07400.1 68418.m00847 forkhead-associated domain-containing p... 29 1.8
At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine deacet... 27 4.2
At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine deacet... 27 4.2
At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine deacet... 27 4.2
At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine deacet... 27 4.2
At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine deacet... 27 4.2
At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family pr... 27 4.2
At5g28482.1 68418.m03463 hypothetical protein similar to At2g066... 27 5.6
At3g60860.1 68416.m06808 guanine nucleotide exchange family prot... 27 5.6
At2g20540.1 68415.m02399 pentatricopeptide (PPR) repeat-containi... 27 5.6
At2g06630.1 68415.m00736 hypothetical protein similar to At2g121... 27 5.6
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 27 7.4
At2g15490.2 68415.m01773 UDP-glucoronosyl/UDP-glucosyl transfera... 26 9.8
At2g15490.1 68415.m01772 UDP-glucoronosyl/UDP-glucosyl transfera... 26 9.8
At2g15480.1 68415.m01771 UDP-glucoronosyl/UDP-glucosyl transfera... 26 9.8
At1g23420.1 68414.m02934 inner no outer protein (INO) identical ... 26 9.8
>At2g26390.1 68415.m03167 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 389
Score = 33.1 bits (72), Expect = 0.085
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = +1
Query: 166 NLADDKNVIASPLGVMLLLSLIRVWSRCTVKEEIREILGGGEAQESSHTYGLLNQRYAEF 345
++A+ NV+ SP+ + +LLSLI S KEEI L + + E
Sbjct: 25 DVANGSNVVFSPMSINVLLSLIAAGSNPVTKEEILSFLMSPSTDHLNAVLAKIADGGTER 84
Query: 346 DPKFLTVANKIYVSDQYKLADAF 414
L+ A+ +++ L +F
Sbjct: 85 SDLCLSTAHGVWIDKSSYLKPSF 107
>At3g45220.1 68416.m04880 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 393
Score = 31.9 bits (69), Expect = 0.20
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 169 LADDKNVIASPLGVMLLLSLIRVWSRCTVKEEI 267
+A+ N++ SP+ + +LL LI S C KE+I
Sbjct: 25 VANGSNLVFSPMSINVLLCLIAAGSNCVTKEQI 57
>At5g07400.1 68418.m00847 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1084
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 178 DKNVIASPLGVMLLLSLIRVWSRCTVKEEIREILG---GGEAQESSHTY 315
D + + P V+ L SLI RCT ++E+LG E+QES Y
Sbjct: 746 DMSKLIQPYHVVALCSLIASLQRCTGIWRLQEVLGRYKWPESQESDFVY 794
>At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine
deacetylase family protein contains Pfam domain PF03331:
UDP-3-O-acyl N-acetylglycosamine deacetylase
Length = 955
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 204 ERRRYHILVVS*VVGFLKNLQGGLVDGIAESCP 106
E RYH +S GF K + G+ + E CP
Sbjct: 886 ESARYHTAFISGKDGFFKPVTLGVAPNVGEPCP 918
>At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain;
Length = 925
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 204 ERRRYHILVVS*VVGFLKNLQGGLVDGIAESCP 106
E RYH +S GF K + G+ + E CP
Sbjct: 856 ESARYHTAFISGKDGFFKPVTLGVAPNVGEPCP 888
>At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine
deacetylase family protein contains Pfam domain PF03331:
UDP-3-O-acyl N-acetylglycosamine deacetylase
Length = 949
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 204 ERRRYHILVVS*VVGFLKNLQGGLVDGIAESCP 106
E RYH +S GF K + G+ + E CP
Sbjct: 880 ESARYHTAFISGKDGFFKPVTLGVAPNVGEPCP 912
>At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 905
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 204 ERRRYHILVVS*VVGFLKNLQGGLVDGIAESCP 106
E RYH +S GF K + G+ + E CP
Sbjct: 836 ESARYHTAFISGKDGFFKPVTLGVAPNVGEPCP 868
>At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 925
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 204 ERRRYHILVVS*VVGFLKNLQGGLVDGIAESCP 106
E RYH +S GF K + G+ + E CP
Sbjct: 856 ESARYHTAFISGKDGFFKPVTLGVAPNVGEPCP 888
>At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 301
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/73 (20%), Positives = 32/73 (43%)
Frame = +1
Query: 91 GHEFSRTRLGDAIDKTSLKILKESYNLADDKNVIASPLGVMLLLSLIRVWSRCTVKEEIR 270
GH + G+ + + ++ + ++DD + ASP+G L W++ V+E
Sbjct: 42 GHFLGSDKKGERLIRAGESSHEDHHQVSDDAVLGASPVGKRRLPEAESQWNKKAVEEFQE 101
Query: 271 EILGGGEAQESSH 309
+ G + + H
Sbjct: 102 DPQRGNDQSQKKH 114
>At5g28482.1 68418.m03463 hypothetical protein similar to At2g06630,
At2g12120, At1g45090, At2g05470
Length = 231
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 264 DKGNPWGR--GGSRVITHIRIIKSALRRIRPEI 356
D GNP RV+TH R IK A+ +RP +
Sbjct: 87 DAGNPTAMYFEALRVLTHERDIKGAINLLRPHV 119
>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
similar to guanine nucleotide exchange factor, Homo
sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
domain
Length = 1793
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +1
Query: 259 EEIREILGG----GEAQESSHTYGLLNQRYAEFDPKFLTVANKIYV 384
E IR L G GEAQ+ +RY + +PK T A+ YV
Sbjct: 698 EAIRTFLEGFRLPGEAQKIDRIMEKFAERYCKCNPKVFTSADSAYV 743
>At2g20540.1 68415.m02399 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 534
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 273 FPYLFLDCAPAPDSYQGKQQH 211
FP++F CA Y GKQ H
Sbjct: 112 FPFMFKSCASLGSCYLGKQVH 132
>At2g06630.1 68415.m00736 hypothetical protein similar to At2g12120,
At1g45090, At2g05470, At5g28482
Length = 231
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 264 DKGNPWGR--GGSRVITHIRIIKSALRRIRPEI 356
D GNP RV+TH R IK A+ +RP +
Sbjct: 87 DAGNPTATYFEALRVLTHERDIKGAINLLRPHV 119
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 26.6 bits (56), Expect = 7.4
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +3
Query: 162 LQPS*RQECDSVSSRRDAAAFLDTSLEPVHSQGRDKGNPWGRGGSRVITHIRIIKSALRR 341
LQ S R+E D V + AA TSLE ++ + ++ + +++ T + + + A R
Sbjct: 190 LQVSLREELDKVKEEKMAAKQKVTSLEDMYKRLQEYNTSLQQYNTKLQTDLEVAREAHTR 249
Query: 342 IRPE 353
E
Sbjct: 250 AEKE 253
>At2g15490.2 68415.m01773 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 270
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 202 LGVMLLLSLIRVWSRCTVKEEIREILGGGEAQE 300
+G L+ ++ SR V++ +RE++GG +A+E
Sbjct: 201 VGATELVKKGKLISRAQVEKAVREVIGGEKAEE 233
>At2g15490.1 68415.m01772 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 484
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 202 LGVMLLLSLIRVWSRCTVKEEIREILGGGEAQE 300
+G L+ ++ SR V++ +RE++GG +A+E
Sbjct: 415 VGATELVKKGKLISRAQVEKAVREVIGGEKAEE 447
>At2g15480.1 68415.m01771 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 372
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 202 LGVMLLLSLIRVWSRCTVKEEIREILGGGEAQE 300
+G L+ ++ SR V++ +RE++GG +A+E
Sbjct: 303 VGATELVKKGKLISRAQVEKAVREVIGGEKAEE 335
>At1g23420.1 68414.m02934 inner no outer protein (INO) identical to
INNER NO OUTER (INO) [Arabidopsis thaliana] GI:6684816
Length = 231
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 247 CTVKEEIREILGGGEAQESSHTYGLLNQRYAEFDPKFLTVANKIYVSDQ 393
C +KEEIR + + + L + +A F P NK SDQ
Sbjct: 144 CFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPP----AHNKRAASDQ 188
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,746,722
Number of Sequences: 28952
Number of extensions: 195360
Number of successful extensions: 532
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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