Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20104
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263     28   6.9  
06_01_0725 + 5305839-5306279,5306816-5307028,5307229-5307675,530...    28   9.1  

>02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263
          Length = 769

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 404 CESNEELGDMPPQCSGEMQAC 466
           C  ++  GD+P QC+GE   C
Sbjct: 160 CRRSQSQGDLPGQCTGESGCC 180


>06_01_0725 +
           5305839-5306279,5306816-5307028,5307229-5307675,
           5307768-5307917,5308185-5308486,5309718-5309758,
           5311294-5311968,5312343-5312386
          Length = 770

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 437 PQCSGEMQACAYLCGFIVKKMALNVL 514
           PQCSG+M    YL  F+     L VL
Sbjct: 389 PQCSGDMDNIVYLASFLKAAPLLEVL 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,539,237
Number of Sequences: 37544
Number of extensions: 293395
Number of successful extensions: 469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)