Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20104
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z77665-1|CAB01220.1|  339|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical
           protein F40G12.1 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/46 (21%), Positives = 28/46 (60%)
 Frame = -3

Query: 149 VFLIYQ*LSKSHIADFDNSRLISYKCLRLTLYHPVSISIKLIFLEC 12
           +F+I + L+   + +++ SR I    + L+++HP+  +  + +++C
Sbjct: 122 IFMIERCLASFFVKNYEKSRKIWVSLMILSIFHPLVFASAIAYIQC 167


>Z77665-1|CAB01220.1|  339|Caenorhabditis elegans Hypothetical
           protein K02E11.2 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/46 (21%), Positives = 28/46 (60%)
 Frame = -3

Query: 149 VFLIYQ*LSKSHIADFDNSRLISYKCLRLTLYHPVSISIKLIFLEC 12
           +F++ + L+   +A+++ SR I    + L+++HP+  +    +++C
Sbjct: 120 IFMVERCLATFLVANYEKSRKIWVSLIILSIFHPLVFASAFAYIQC 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,718,537
Number of Sequences: 27780
Number of extensions: 313561
Number of successful extensions: 568
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)