Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20103
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    31   0.14 
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    29   0.57 
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    28   1.7  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    27   3.0  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    26   7.0  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   7.0  

>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 445 TGPNKSDTLDTESSAPSPWTHSSLWV*KF*PLFSVVER 558
           T PN S TL T+S+AP+P   +S+ +  F P    ++R
Sbjct: 261 TSPNTSSTLITQSAAPTPIASTSIRINSFNPRNGSIKR 298


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -1

Query: 736 NDALRASRRFITM--LKNSPACFAMEATWSGSFAPSTDDRM-TANIPC 602
           N+ +  +R F+    LK+   CF  EA WS S   +TD+R+  A + C
Sbjct: 191 NEIMSKTRAFVMFVSLKHCEDCFHWEAVWS-SITRNTDERLKMAQVNC 237


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 296 NVNSLKNQTLLKKSP*MI*MTFKLIQFPMDFH-GQTSYPQFCKHFSS 433
           +V SLKN+ LLK +P    + FKL+ F    H    SY +  +HF +
Sbjct: 125 SVFSLKNERLLKYNP----LNFKLLIFDEVHHMASPSYLRILEHFGA 167


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = -1

Query: 739 ENDALRASRRFITMLKNSPACFAMEATWSGSFAPSTDDRMTANIPCIGEDPLSTLSMPS 563
           E DAL    + +   K+ P+       +  +F P    R+ + +P I + P++  S+ S
Sbjct: 313 EKDALELEEQTMEDEKSYPSSGTQSPFYGKNFLPQITPRLDSVVPLISDSPMTPNSVYS 371


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +1

Query: 46  LALPCGRLC--SVIQ*YQFRY*IKDVFENHRLGLSGLDLLINNPPD-DRISPTTSTHITG 216
           +AL  G+ C   +IQ  + R  +KD+ +NH +G +G   L+ +  D D++  T  TH   
Sbjct: 103 IALQEGKNCRNKIIQEAE-RMLVKDLEDNHNIGTAGRKFLLQHYKDKDKL--TVLTHCNT 159

Query: 217 DE*RQNAWSTIL 252
                + + T L
Sbjct: 160 GSLATSGYGTAL 171


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 QQLPLISQVTSNVRTHGPQYYITHCQYHNRKRSSKNVNS 307
           + + ++ ++  N  + GPQ+ ++H Q      +SK  +S
Sbjct: 38  EYIRMVDRIRKNKLSSGPQHLLSHLQKEENSNTSKASSS 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,176
Number of Sequences: 5004
Number of extensions: 69454
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)