Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20103
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317...    30   2.4  
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468...    29   5.5  
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639...    29   5.5  
10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359     28   7.2  
08_01_0972 - 9789453-9790364,9790383-9790861,9791071-9792238           28   9.6  
08_01_0146 + 1148535-1148577,1148650-1148918,1148924-1149409,114...    28   9.6  

>04_04_0939 -
           29530242-29531087,29531406-29531597,29531690-29531770,
           29532300-29532428,29532579-29532650,29532761-29532829,
           29533809-29533891,29534101-29534203,29534289-29534402,
           29536230-29536274
          Length = 577

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +2

Query: 419 KHFS---STVASRAPTKATPWTQNHQLRLLGLTHRYGSKNSDRSSRWWSGYRWH*QSRQW 589
           KHF+    T A+R+P  A     N        T R+G+ N+DRSSR  S   W  ++ ++
Sbjct: 445 KHFNPIYQTSANRSPFSAVASGVNEASVSDISTRRFGASNADRSSR--SSVYWDQEAGRF 502

Query: 590 IFTNAGY 610
           + + A +
Sbjct: 503 VSSQANH 509


>08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,
            4683834-4684204,4684290-4684835,4684927-4685027,
            4685117-4685933,4686025-4686213,4686313-4686384,
            4686477-4686587,4686647-4686652,4686694-4686794,
            4687714-4687813,4687891-4687986,4688157-4688273,
            4688367-4688492,4688566-4688619,4688745-4688992,
            4689087-4689195,4689284-4689583,4689799-4689963
          Length = 2240

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 478  ESSAPSPWTHSSLWV*KF*PLFSVVERLQMALTKSTMDLHQCRVYWL 618
            E+ A  PW    +WV K  P F     +   L  S +D     V+WL
Sbjct: 2187 ENQAQRPWPKDRIWVFKSDPRFFGTPMMDAVLNNSPLDKEM--VHWL 2231


>03_02_0205 +
           6389343-6389609,6390418-6390486,6390662-6390757,
           6391120-6391244,6391331-6391483,6392863-6392992,
           6393122-6393282,6393660-6393702,6393869-6394042,
           6394471-6394525,6394567-6394746,6396234-6396339,
           6396448-6396506,6397419-6397541,6397825-6397919
          Length = 611

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 721 ASRRFITMLKNSPACFAMEATWSGSFAPSTDDRMTANIPCIGEDPLSTLSMP 566
           ASRR  T +  + A    + +W+ S A ST    T N+P + +  L T  +P
Sbjct: 506 ASRRSAT-ISYTAATRLRKGSWTTSVATSTSTACTINVPRVIDSNLDTAIVP 556


>10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359
          Length = 514

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 413 FCKHFSSTVASRAPTKATPWTQNHQLRLLGLTHRYGSKNSDRSSRWWSG 559
           + +   +  A  A  +A P   +H   LL L+H Y    + R S  WSG
Sbjct: 267 YVREVMAVYADGAGAQAQPPAADHVHHLLHLSHMYLRPRTRRQSSRWSG 315


>08_01_0972 - 9789453-9790364,9790383-9790861,9791071-9792238
          Length = 852

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 721 ASRRFITMLKNSPACFAMEATWSGSFAPSTDDRMTANIPCIGEDPLS 581
           AS+ ++  LK  P+  AME     +F   TDD+  A +  I  + +S
Sbjct: 325 ASKNYVVELKTLPSDKAMELFCKKAFRSDTDDKCLAKLNDISVEIVS 371


>08_01_0146 +
           1148535-1148577,1148650-1148918,1148924-1149409,
           1149543-1149905
          Length = 386

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 500 GLTHRYGSKNSDRSSRWWS 556
           GL  ++  KN D++ RWWS
Sbjct: 170 GLGDKFFPKNGDKAGRWWS 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,849,639
Number of Sequences: 37544
Number of extensions: 465755
Number of successful extensions: 1230
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)