Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20103
         (781 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058708-1|AAL13937.1|  286|Drosophila melanogaster LD43816p pro...    60   3e-09
AE014297-1454|AAF54752.2|  286|Drosophila melanogaster CG4702-PA...    60   3e-09
AJ556568-1|CAD89133.1|  190|Drosophila melanogaster peptidoglyca...    29   9.5  
AJ556565-1|CAD89130.1|  190|Drosophila melanogaster peptidoglyca...    29   9.5  
AJ556563-1|CAD89128.1|  190|Drosophila melanogaster peptidoglyca...    29   9.5  

>AY058708-1|AAL13937.1|  286|Drosophila melanogaster LD43816p
           protein.
          Length = 286

 Score = 60.5 bits (140), Expect = 3e-09
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
 Frame = +1

Query: 265 PVPQQEEIVQERKFAEKPNALKKVAXXXXXX-IQTNSISD------GFSWTNFLSSILQT 423
           PV + E +   RKFA KPNA KKVA       ++TN I +      GF+W+N LS+++ T
Sbjct: 43  PVYRDESVA--RKFAVKPNASKKVALDDIEDDLETNQIQESVGGPGGFTWSNMLSTVM-T 99

Query: 424 FFVNGGVTGPNKSDTLDTE-SSAPSPWTH 507
            F NG V  P KSD +D+      SPW +
Sbjct: 100 MFFNGAVNSPTKSDDVDSSIGLGGSPWAN 128



 Score = 50.0 bits (114), Expect = 4e-06
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
 Frame = +3

Query: 564 DGIDK-VDNGSSPMQGILAV---ILSSVLGAKDPDQVASMAKQAG---EFFSIVMNLLDA 722
           D +D  +  G SP   ++++   I++++LG   P          G   +F  IVMNLLDA
Sbjct: 113 DDVDSSIGLGGSPWANVISMGLRIINTLLGGGAPSDGIDKVDNGGSPMQFIQIVMNLLDA 172

Query: 723 LKASFSHRSLAAR 761
           LK SFSHRSL AR
Sbjct: 173 LKTSFSHRSLTAR 185



 Score = 40.3 bits (90), Expect = 0.003
 Identities = 20/40 (50%), Positives = 25/40 (62%)
 Frame = +3

Query: 504 SLIAMGLKIXXXXXXXXXXXDGIDKVDNGSSPMQGILAVI 623
           ++I+MGL+I           DGIDKVDNG SPMQ I  V+
Sbjct: 128 NVISMGLRIINTLLGGGAPSDGIDKVDNGGSPMQFIQIVM 167


>AE014297-1454|AAF54752.2|  286|Drosophila melanogaster CG4702-PA
           protein.
          Length = 286

 Score = 60.5 bits (140), Expect = 3e-09
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
 Frame = +1

Query: 265 PVPQQEEIVQERKFAEKPNALKKVAXXXXXX-IQTNSISD------GFSWTNFLSSILQT 423
           PV + E +   RKFA KPNA KKVA       ++TN I +      GF+W+N LS+++ T
Sbjct: 43  PVYRDESVA--RKFAVKPNASKKVALDDIEDDLETNQIQESVGGPGGFTWSNMLSTVM-T 99

Query: 424 FFVNGGVTGPNKSDTLDTE-SSAPSPWTH 507
            F NG V  P KSD +D+      SPW +
Sbjct: 100 MFFNGAVNSPTKSDDVDSSIGLGGSPWAN 128



 Score = 50.0 bits (114), Expect = 4e-06
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
 Frame = +3

Query: 564 DGIDK-VDNGSSPMQGILAV---ILSSVLGAKDPDQVASMAKQAG---EFFSIVMNLLDA 722
           D +D  +  G SP   ++++   I++++LG   P          G   +F  IVMNLLDA
Sbjct: 113 DDVDSSIGLGGSPWANVISMGLRIINTLLGGGAPSDGIDKVDNGGSPMQFIQIVMNLLDA 172

Query: 723 LKASFSHRSLAAR 761
           LK SFSHRSL AR
Sbjct: 173 LKTSFSHRSLTAR 185



 Score = 40.3 bits (90), Expect = 0.003
 Identities = 20/40 (50%), Positives = 25/40 (62%)
 Frame = +3

Query: 504 SLIAMGLKIXXXXXXXXXXXDGIDKVDNGSSPMQGILAVI 623
           ++I+MGL+I           DGIDKVDNG SPMQ I  V+
Sbjct: 128 NVISMGLRIINTLLGGGAPSDGIDKVDNGGSPMQFIQIVM 167


>AJ556568-1|CAD89133.1|  190|Drosophila melanogaster peptidoglycan
           recognition proteinSB1 protein.
          Length = 190

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 599 NAGYIGCHSVVGTRCKRSRPGRLHGKAGWRVL*HRDEPSGCS 724
           NA  I   S  G    RS P R+ G   + ++ H D P+GCS
Sbjct: 23  NALQIEPRSSWGAASARS-PSRISGAVDYVIIHHSDNPNGCS 63


>AJ556565-1|CAD89130.1|  190|Drosophila melanogaster peptidoglycan
           recognition proteinSB1 protein.
          Length = 190

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 599 NAGYIGCHSVVGTRCKRSRPGRLHGKAGWRVL*HRDEPSGCS 724
           NA  I   S  G    RS P R+ G   + ++ H D P+GCS
Sbjct: 23  NALQIEPRSSWGAASARS-PSRISGAVDYVIIHHSDNPNGCS 63


>AJ556563-1|CAD89128.1|  190|Drosophila melanogaster peptidoglycan
           recognition proteinSB1 protein.
          Length = 190

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 599 NAGYIGCHSVVGTRCKRSRPGRLHGKAGWRVL*HRDEPSGCS 724
           NA  I   S  G    RS P R+ G   + ++ H D P+GCS
Sbjct: 23  NALQIEPRSSWGAASARS-PSRISGAVDYVIIHHSDNPNGCS 63


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,775,704
Number of Sequences: 53049
Number of extensions: 770542
Number of successful extensions: 1963
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1959
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)