Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20103
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46950.1 68416.m05097 mitochondrial transcription termination...    31   1.1  
At5g01200.1 68418.m00025 myb family transcription factor contain...    30   1.5  
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa...    29   3.5  
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa...    29   3.5  
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa...    29   3.5  
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa...    29   3.5  
At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong s...    29   4.6  
At5g04760.1 68418.m00490 myb family transcription factor contain...    28   6.0  
At3g16350.1 68416.m02068 myb family transcription factor ; conta...    28   6.0  
At2g39580.1 68415.m04855 expressed protein                             28   6.0  
At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein (H...    28   8.0  

>At3g46950.1 68416.m05097 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 450

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 395 QTSYPQFCKHFSSTVASRAPTKATPWTQNHQLRLLGLTHR 514
           Q ++P   K FSST+A  +  K + +T ++ +  LGLT +
Sbjct: 28  QNAFPFTTKSFSSTIAKDSSPKGSTFTVSYLVESLGLTKK 67


>At5g01200.1 68418.m00025 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 267

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 392 GQTSYPQFCKHFSSTVASRAPTKATPWTQNHQLRLLGLTHRYG 520
           G+ S P     F S +  +   K  PWT++  LR L    +YG
Sbjct: 122 GKRSSPAMTDCFRSPMPEKERKKGVPWTEDEHLRFLMGLKKYG 164


>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 491

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 31  FTGDILALPCGRLCSVIQ*YQFRY*IKDVFE-NHRLGLSGLDLLINNPPD 177
           F  D++ +PC +L   I   ++R  ++ + E NHR+G+  LD    +P D
Sbjct: 283 FVMDVI-IPCQKLSLHIFEPRYRLMVRRIMEGNHRMGMVALDSATGSPVD 331


>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 486

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 31  FTGDILALPCGRLCSVIQ*YQFRY*IKDVFE-NHRLGLSGLDLLINNPPD 177
           F  D++ +PC +L   I   ++R  ++ + E NHR+G+  LD    +P D
Sbjct: 283 FVMDVI-IPCQKLSLHIFEPRYRLMVRRIMEGNHRMGMVALDSATGSPVD 331


>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 486

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 31  FTGDILALPCGRLCSVIQ*YQFRY*IKDVFE-NHRLGLSGLDLLINNPPD 177
           F  D++ +PC +L   I   ++R  ++ + E NHR+G+  LD    +P D
Sbjct: 283 FVMDVI-IPCQKLSLHIFEPRYRLMVRRIMEGNHRMGMVALDSATGSPVD 331


>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 486

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 31  FTGDILALPCGRLCSVIQ*YQFRY*IKDVFE-NHRLGLSGLDLLINNPPD 177
           F  D++ +PC +L   I   ++R  ++ + E NHR+G+  LD    +P D
Sbjct: 283 FVMDVI-IPCQKLSLHIFEPRYRLMVRRIMEGNHRMGMVALDSATGSPVD 331


>At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong
           similarity to SPL1-Related2 protein [Arabidopsis
           thaliana] GI:6006427; contains Pfam profile PF03110: SBP
           domain
          Length = 1035

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 585 NGSSPMQGILAVILSSVLGAKDPDQVASMAK 677
           NG+SP    L  +LS+ LG+  PD +A +++
Sbjct: 297 NGASPSTMDLLAVLSTTLGSSSPDALAILSQ 327


>At5g04760.1 68418.m00490 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 215

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 425 FSSTVASRAPTKATPWTQN-HQLRLLGLTHRYG 520
           F S        + TPWT+N H+L L+GL  RYG
Sbjct: 86  FGSKHGESERKRGTPWTENEHKLFLIGL-KRYG 117


>At3g16350.1 68416.m02068 myb family transcription factor ; contains
           Pfam profile: PF00249 Myb-like DNA-binding domain
          Length = 387

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 209 SQVTSNVRTHGPQYYITHCQYHNRKRSSKNVNSLKNQTLLKKSP 340
           S+  + V +H  +Y+I H     RKR S   + + ++ +   SP
Sbjct: 169 SRTPTQVASHAQKYFIRHTSSSRRKRRSSLFDMVTDEMVTDSSP 212


>At2g39580.1 68415.m04855 expressed protein
          Length = 1567

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
 Frame = +2

Query: 257  THCQYHNRKRSSKNVNSLKNQTLLKKSP*MI*MTFKLIQFPMDFHGQTSYPQFCKHFSST 436
            +H + HN  + S+ ++S+ + T L     M   ++         HGQ     +CKHFS+ 
Sbjct: 850  SHQKTHNSSKGSQILDSVFSPTYLVSLDTMKVDSWSYESVLAQRHGQI----WCKHFSAC 905

Query: 437  VA-SRAPTKATPWTQNH-QLRLLGLTHRYGSKNSDRSSRWW 553
            +A S +  +  P  +N  ++ +LG +  Y S    + S  W
Sbjct: 906  LASSNSLYRNVPAKENEGRIVVLGNSKTYSSYFRIKHSLMW 946


>At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein
           (HSP22.0-ER) identical to endomembrane-localized small
           heat shock protein GI:511795 from [Arabidopsis thaliana]
          Length = 195

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +1

Query: 403 LSSILQTFFVNGGVTGPNKSDTLDTESSAPS-PWTH-SSLWV*KF*PLFSVVERLQMALT 576
           +  +L  FF+   + G  K+      S+  + P +  S LW+ +F   F ++ER+ + L 
Sbjct: 2   MKHLLSIFFIGALLLGNIKTSEGSLSSALETTPGSLLSDLWLDRFPDPFKILERIPLGLE 61

Query: 577 KST-MDLHQCRVYW 615
           + T + L   RV W
Sbjct: 62  RDTSVALSPARVDW 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,433,960
Number of Sequences: 28952
Number of extensions: 372878
Number of successful extensions: 1030
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)