Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20101
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 27 2.4
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 5.4
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 26 5.4
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 5.4
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 26 5.4
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 26 7.2
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 26 7.2
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 9.5
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 9.5
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 25 9.5
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 419 ATSTGFPFSLTNSVTVHSPLSCLYPRPSLITYVQK 315
ATS PFSL+ V P S ++ +PS Q+
Sbjct: 152 ATSANNPFSLSTDVNPSKPSSNVFSKPSFAAKAQQ 186
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +1
Query: 403 NPV---DVANPPVATSTTGPLQIPQQASTPIVRPEQTCQRQKQWSKAAIK 543
NPV +V P S+ P + +A TP P Q + + K AIK
Sbjct: 481 NPVTHTEVVVPQKNASSPNPSETNSRAETPTAAPPQISEEEASQRKDAIK 530
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 418 ANPPVATSTTGPLQIPQQASTPIVRPEQTCQRQKQWSK 531
A+ ++ ++T P ++ AST IVRP Q + S+
Sbjct: 257 ASGSISKNSTSPSKVKVNASTKIVRPVSAAQTVRPGSR 294
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 415 VANPPVATSTTGPLQIPQQASTP 483
+ P + STT P +PQ +STP
Sbjct: 397 ILKKPSSLSTTDPTLVPQSSSTP 419
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 421 NPPVATSTTGPLQIPQQASTPIVR 492
NP A+STTG I Q S P +R
Sbjct: 77 NPSAASSTTGENSISQTGSGPFLR 100
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 698 RSGIKADGPISCVDIEWIIRFF 633
+ G+K D PIS +I+ IRFF
Sbjct: 715 KQGMKYDSPISVKEIKPFIRFF 736
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.8 bits (54), Expect = 7.2
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Frame = -3
Query: 564 RSKFPYRFYRGLGPLFLTLARLFRSNDRSAGLLGYLQWTRGRCGHRWVGYVYWIPIFIDE 385
+S P F G F + +R + +N + L W G + WI +FI +
Sbjct: 553 QSFIPLPFLLGPRFKFRSSSRKYLANSYFTNDIASLPW-----GRTLLSAALWITVFIAK 607
Query: 384 FCYSPFAVILPISEAILDYIRPEINLISQF*LSISV-SERPNAVLALVMSLD 232
F S + + L + + I R + F + S+ S +P +L+LV D
Sbjct: 608 FVESYYFLTLSVRDPIRFLQRMKPYDCYDFMIGASLCSHQPKFLLSLVYLTD 659
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 127 YSFKFSWRDDVLGGSGLRRTY 65
+ F DD GGSGL+R Y
Sbjct: 25 FGFNSKLLDDAFGGSGLKRGY 45
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = +2
Query: 173 LFAFHGKLNEEMEGLESGHWSRDITK------AKTAFGRSETEM 286
++ FHG ++E++ L G W + K + T ++ETEM
Sbjct: 426 VWVFHGCRDQELDELYHGEWENPLQKSSDDDASSTVSQQTETEM 469
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 9.5
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Frame = +3
Query: 528 QGRDKICKGTLIFSDEFEKNSLKDLT-SWG-AEVRFP------EEPDYPFNVYTTDGTIG 683
+GR CKG+ + +D F ++ L+ L S G +R+P PF V + G +
Sbjct: 43 KGRLYQCKGSGMVADVFSQHQLRQLVGSMGIGHLRYPTAGSCAHSEAQPFYVNSPYGLVL 102
Query: 684 FDSGSLIISPVL 719
+G+LI P L
Sbjct: 103 GHNGNLINGPEL 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,440,244
Number of Sequences: 5004
Number of extensions: 74722
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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