Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20101
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0508 + 4027113-4028522                                           35   0.086
06_01_0927 - 7155348-7155753,7156053-7156252,7156401-7156501,715...    30   2.5  
01_01_0771 - 5982826-5983327,5983424-5984772                           30   2.5  
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281...    28   7.5  
11_01_0411 - 3114959-3115000,3115504-3116703                           28   7.5  
11_01_0345 + 2579602-2579836,2581262-2581484,2582822-2583173,258...    28   7.5  
05_02_0024 - 5702501-5702664,5703219-5703393,5703716-5704099,570...    28   7.5  
03_05_0456 - 24498212-24499581,24502660-24503071                       28   7.5  
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011...    28   9.9  

>12_01_0508 + 4027113-4028522
          Length = 469

 Score = 34.7 bits (76), Expect = 0.086
 Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -1

Query: 449 PVVDVATGGLA---TSTGFPFSLTNSVTVHSPLSCLY 348
           PV   ATGG A   TSTGFPFS++ ++ V   LS +Y
Sbjct: 60  PVEGAATGGRASHRTSTGFPFSVSLNLAVPPALSSIY 96


>06_01_0927 -
           7155348-7155753,7156053-7156252,7156401-7156501,
           7156646-7156862
          Length = 307

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 558 LIFSDEFEKNSLKDLTSWGAEVRFPEEPDYP 650
           +IF DE     LK+LTS G E  FP +P  P
Sbjct: 173 VIFVDETPVRVLKNLTSRGPEFEFPAKPMRP 203


>01_01_0771 - 5982826-5983327,5983424-5984772
          Length = 616

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 384 FCYSPFAVILPISEAILDYIRPEINLISQF 295
           FCY+ FAV +P++     Y+R E+  ++ F
Sbjct: 132 FCYTEFAVEIPVAGGSFAYLRVELGDVAAF 161


>12_01_0368 +
           2815424-2815658,2816898-2817120,2818329-2818680,
           2819354-2819620
          Length = 358

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 393 IDEFCYSPFAVILPISEAILDYIRPEINLISQF 295
           +  FCY+ FAV +P++     Y+R     ++ F
Sbjct: 52  LSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAF 84


>11_01_0411 - 3114959-3115000,3115504-3116703
          Length = 413

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +1

Query: 226 ALVQGHH*SQNGVWTFRDRNAQLKLGDKIYFWTYVIKDGLGYRQDNGEWTVTEFVNENGN 405
           A +  H+ + N  W  R+R  +L L    Y W + +   +  +Q    W +   +N   N
Sbjct: 175 ARMAAHYNTVNDGWLIRNRQIRLDLWHVDYLWNWGLMSWVVQQQGGKMWPI-RLINSGIN 233

Query: 406 PVDVA 420
            +  A
Sbjct: 234 SISEA 238


>11_01_0345 +
           2579602-2579836,2581262-2581484,2582822-2583173,
           2583894-2584125,2584683-2585266
          Length = 541

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 393 IDEFCYSPFAVILPISEAILDYIRPEINLISQF 295
           +  FCY+ FAV +P++     Y+R     ++ F
Sbjct: 52  LSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAF 84


>05_02_0024 -
           5702501-5702664,5703219-5703393,5703716-5704099,
           5705787-5705864,5706015-5706140
          Length = 308

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 510 TSETVVQGRDKICKGTLIFSDEFEKNSLKDLTSW 611
           T E  V+G+ K CK  L+    F K    + TSW
Sbjct: 88  TREITVRGQPKGCKKILVLYTSFGKKRKAEKTSW 121


>03_05_0456 - 24498212-24499581,24502660-24503071
          Length = 593

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 405 IPIFIDEFCYSPFAVILPISEAILDYIRPEI 313
           +   +  FCY+ FAV +P++     Y+R E+
Sbjct: 118 VSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL 148


>07_03_1091 +
           23899825-23900649,23900750-23900998,23901104-23901195,
           23901413-23902193
          Length = 648

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 424 PPVATSTTGPLQIPQQASTPIVRP 495
           PPV++ST+ P  +P     P +RP
Sbjct: 2   PPVSSSTSRPASLPSSPHRPALRP 25


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,942,184
Number of Sequences: 37544
Number of extensions: 504704
Number of successful extensions: 1446
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)