Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20101
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    32   0.41 
AF047655-11|AAC04405.1|  336|Caenorhabditis elegans Seven tm rec...    31   0.72 
AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    29   5.1  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    29   5.1  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    28   6.7  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   6.7  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   6.7  
Z93377-2|CAB07575.2|  326|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin ...    28   8.9  

>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +1

Query: 340 GLGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQ 501
           G G RQ N E  +   V E  NP    N P AT  +GP+  P   + P+   +Q
Sbjct: 695 GEGKRQMNEEARLQHEVAEKANPPSFFNAPAATRGSGPMP-PLNGTAPLPSGQQ 747


>AF047655-11|AAC04405.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 63 protein.
          Length = 336

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +3

Query: 522 VVQGRDKICKGTLIFSDEFEKNSLKDLTSWGAEVRFPEEPDYPFNVYTTDGTIGFDSGSL 701
           V+ G   +   TLI  D+   ++L+ L     ++   E P Y    Y  DG++ + +  L
Sbjct: 139 VIGGFFAVMVETLIAKDKMLDDNLRKLIFENYQLLISELPKYNITPYNLDGSVNWGNFGL 198

Query: 702 IISPVLLES 728
           ++  V L S
Sbjct: 199 LVIAVFLNS 207


>AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical
           protein Y116A8A.4 protein.
          Length = 441

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = +1

Query: 256 NGVWTFRDRNAQLKLGDKIYFWTYVIKDGLGYR------QDNGEWTVTEFVNENGNPV 411
           NGV    D     KLGD ++F+ Y   D L ++      +D G  T T +  E G P+
Sbjct: 183 NGVPCLADETTSSKLGDVVHFYGYSDYDLLHHKLLIKAVKDGGICTETYYTEEVGGPL 240


>Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical
           protein F01G4.5 protein.
          Length = 269

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 361 NGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPI 486
           N EWTV EF ++ GN  D  N  +    + P  +  + +TP+
Sbjct: 47  NWEWTVNEFWDQTGNVADNLNGTITWLRSNPAGL--KLNTPV 86


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 343  LGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQT 504
            LG R   G+ ++   +N  G    V   P +T  + PL  P  +STP  RP  T
Sbjct: 2174 LGIRNSYGDNSIDAIIN--GGSRSVGFYPRSTFASNPLTPPLGSSTPTHRPHVT 2225


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 343  LGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQT 504
            LG R   G+ ++   +N  G    V   P +T  + PL  P  +STP  RP  T
Sbjct: 2247 LGIRNSYGDNSIDAIIN--GGSRSVGFYPRSTFASNPLTPPLGSSTPTHRPHVT 2298


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 388  VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 495
            VNE+G+P+DV   P+  +  G    P++++    +P
Sbjct: 2289 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2324


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 388  VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 495
            VNE+G+P+DV   P+  +  G    P++++    +P
Sbjct: 2352 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2387


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 388  VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 495
            VNE+G+P+DV   P+  +  G    P++++    +P
Sbjct: 2352 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2387


>Z93377-2|CAB07575.2|  326|Caenorhabditis elegans Hypothetical
           protein F13A7.3 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 552 PYRF-YRGLGPLFLTLARLFRSNDRSAGLLGYLQWTRGRCGHRWVGYVYWIPIFI 391
           P+ F  RG+G  F+T  R + +  RS G L Y      +C    +G+ +W+  F+
Sbjct: 93  PFMFTLRGVGVFFITTQR-YLAVCRSHGTLNY---RLNQCPPLLIGFTHWLVAFL 143


>Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical
           protein F44A6.1b protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 388 VNENGNPVDVANPPVATSTTGPLQIPQQ 471
           VN N  PV  A PPV      P Q PQQ
Sbjct: 415 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 442


>Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical
           protein F44A6.1a protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 388 VNENGNPVDVANPPVATSTTGPLQIPQQ 471
           VN N  PV  A PPV      P Q PQQ
Sbjct: 401 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 428


>AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin
           protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 388 VNENGNPVDVANPPVATSTTGPLQIPQQ 471
           VN N  PV  A PPV      P Q PQQ
Sbjct: 404 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,151,432
Number of Sequences: 27780
Number of extensions: 424514
Number of successful extensions: 1235
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)