Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20101
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   7.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 424 PPVATSTTGPLQIPQQASTPIVRPEQTC 507
           PPV    +G + + Q  ST +V   Q C
Sbjct: 237 PPVILENSGVVHVAQDESTSLVCVAQAC 264


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 424 PPVATSTTGPLQIPQQASTPIVRPEQTC 507
           PPV    +G + + Q  ST +V   Q C
Sbjct: 237 PPVILENSGVVHVAQDESTSLVCVAQAC 264


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 607 LVKSLRLFFSNSSLKIKVPLQILSRPWTT 521
           ++ +  LF+   SL+I +P +    PW T
Sbjct: 117 IILAWALFYLLVSLRIDLPWRTCGNPWNT 145


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 607 LVKSLRLFFSNSSLKIKVPLQILSRPWTT 521
           ++ +  LF+   SL+I +P +    PW T
Sbjct: 170 IILAWALFYLLVSLRIDLPWRTCGNPWNT 198


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 416 TSTGFPFSLTNSVTVHSPLSCLYP 345
           T   F FS+    T H+PLS  +P
Sbjct: 304 TPGSFNFSMAALATEHTPLSVKFP 327


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 316 FWTYVIKDGLGYRQDN 363
           F+T V+ D + YR DN
Sbjct: 248 FFTRVVTDTIKYRNDN 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,338
Number of Sequences: 438
Number of extensions: 5008
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)